Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006604 | Potato | nucleus | 83.82 | 85.07 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 45.1 | 61.54 |
| Bra037972.1-P | Field mustard | nucleus | 36.52 | 52.1 |
| CDY33081 | Canola | nucleus | 38.73 | 49.53 |
| CDY10614 | Canola | nucleus | 36.52 | 49.17 |
| CDY24062 | Canola | nucleus | 39.22 | 48.78 |
| CDX97534 | Canola | nucleus | 37.99 | 47.84 |
| Bra030898.1-P | Field mustard | nucleus | 35.29 | 47.06 |
| KRH06149 | Soybean | nucleus | 49.51 | 46.87 |
| AT3G13980.1 | Thale cress | nucleus | 40.93 | 46.78 |
| CDY33260 | Canola | nucleus | 40.2 | 46.59 |
| CDY55213 | Canola | nucleus | 34.31 | 46.05 |
| CDY39086 | Canola | nucleus | 39.71 | 46.02 |
| Bra021523.1-P | Field mustard | nucleus | 39.22 | 45.85 |
| AT1G54200.1 | Thale cress | nucleus | 40.69 | 45.36 |
| KRH47572 | Soybean | nucleus | 47.55 | 45.12 |
| Bra027381.1-P | Field mustard | nucleus | 39.22 | 43.72 |
| Solyc08g062180.1.1 | Tomato | nucleus | 37.25 | 39.28 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 15.44 | 20.39 |
Protein Annotations
| EnsemblPlants:Solyc03g121970.1.1 | EnsemblPlantsGene:Solyc03g121970.1 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF7 | SEG:seg | UniParc:UPI00027657C4 |
| UniProt:K4BMZ5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:69972437..69973663
Molecular Weight (calculated)
45756.1 Da
IEP (calculated)
8.191
GRAVY (calculated)
-0.866
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRYSYQRER EISHSSNPSF SSTLLDAIYR SIDQGEEEEE IVLYKETMRK KQSNNMESFQ KACMIEKWME HKASEKVVVR RKSIADFERN LMNSSSSSSD
101: SSCGGVFSSS ETESSYNNVV INSAGSSSSC YGLNRPKPIR TSISGSNPEK HSKNQAKQLN NYGDFRHNHP PMERDFAPKT KSETGFVKTK SKALKIYGDL
201: KKVKQPISPG GRLASFLNSL FTAGNTKKPK VVSSNSANAS STCSSASSFS RSCLSKSTPK SSSNGTKRSV RFYPVSIIVD EDCQPCGHKN LYEEKIPKPE
301: SLKNNIRNTV NEELKFHSME KNRRVEEATK ELLRNYQRNS NSQIKKMEIF DDEDDDDDDG ASCASSDLFE LDNLSAIGID SNRYLEELPV YETTHLDTNR
401: AIASGLIL
101: SSCGGVFSSS ETESSYNNVV INSAGSSSSC YGLNRPKPIR TSISGSNPEK HSKNQAKQLN NYGDFRHNHP PMERDFAPKT KSETGFVKTK SKALKIYGDL
201: KKVKQPISPG GRLASFLNSL FTAGNTKKPK VVSSNSANAS STCSSASSFS RSCLSKSTPK SSSNGTKRSV RFYPVSIIVD EDCQPCGHKN LYEEKIPKPE
301: SLKNNIRNTV NEELKFHSME KNRRVEEATK ELLRNYQRNS NSQIKKMEIF DDEDDDDDDG ASCASSDLFE LDNLSAIGID SNRYLEELPV YETTHLDTNR
401: AIASGLIL
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.