Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027381.1-P | Field mustard | nucleus | 87.65 | 77.6 |
| CDY02474 | Canola | nucleus | 16.98 | 77.46 |
| CDY55213 | Canola | nucleus | 62.65 | 66.78 |
| CDY39086 | Canola | nucleus | 70.06 | 64.49 |
| CDY33260 | Canola | nucleus | 69.14 | 63.64 |
| AT3G13980.1 | Thale cress | nucleus | 62.35 | 56.58 |
| CDY33081 | Canola | nucleus | 53.4 | 54.23 |
| CDY24062 | Canola | nucleus | 53.09 | 52.44 |
| CDY10614 | Canola | nucleus | 47.84 | 51.16 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 42.9 | 46.49 |
| PGSC0003DMT400030328 | Potato | nucleus | 21.91 | 41.28 |
| Solyc03g121970.1.1 | Tomato | nucleus | 47.84 | 37.99 |
| KRH06149 | Soybean | nucleus | 50.31 | 37.82 |
| KRH47572 | Soybean | nucleus | 49.69 | 37.44 |
| CDX91176 | Canola | nucleus, plastid | 9.57 | 32.63 |
| PGSC0003DMT400030330 | Potato | nucleus | 20.99 | 32.08 |
| CDX91175 | Canola | plastid | 15.12 | 32.03 |
| CDX78464 | Canola | nucleus | 31.79 | 31.5 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 31.17 | 30.15 |
| CDX69710 | Canola | nucleus | 30.86 | 29.5 |
| CDX85703 | Canola | plastid | 22.22 | 27.38 |
| CDX70442 | Canola | nucleus | 31.79 | 26.14 |
Protein Annotations
| EnsemblPlants:CDX97534 | EnsemblPlantsGene:GSBRNA2T00104744001 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | ProteinID:CDX97534 | ProteinID:CDX97534.1 |
| SEG:seg | UniParc:UPI0004EDB8F0 | MapMan:35.1 | : | : | : |
Description
BnaA05g25450D
Coordinates
chrLK031900:-:169433..170533
Molecular Weight (calculated)
36680.7 Da
IEP (calculated)
9.648
GRAVY (calculated)
-0.906
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: METWEKPRLS SSRDHYRQPS FSSTLLDQIY RSIDDSPPLE STRKKKHPHR NNTSLHEEHA SDKLRSRRTT ATSISSLDSF YLRSKSSPPH TRQPKPIRTS
101: VVEKPSSKQE HGGFLRTKSK ALKIYTDLKK VKQPLSPGGR LATFLNSLFT NASSNHKKLK KINTTSSSNT TCSSTSSFSR SCLSKTPSSS GKSKRSVRFC
201: PVNVILDEDS SIHIPYGYSN KLHGNNVERH VMEEENRRVI EAAKDLIRTY QKNKDHLAVT TCDNVQEDDE DDIDDDAASY ASSDLFELEN LSAIGIERYR
301: EELPVYETTR LDNTNRAIAT SLIV
101: VVEKPSSKQE HGGFLRTKSK ALKIYTDLKK VKQPLSPGGR LATFLNSLFT NASSNHKKLK KINTTSSSNT TCSSTSSFSR SCLSKTPSSS GKSKRSVRFC
201: PVNVILDEDS SIHIPYGYSN KLHGNNVERH VMEEENRRVI EAAKDLIRTY QKNKDHLAVT TCDNVQEDDE DDIDDDAASY ASSDLFELEN LSAIGIERYR
301: EELPVYETTR LDNTNRAIAT SLIV
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.