CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69710	Canola	nucleus	83.28	82.3
CDX78464	Canola	nucleus	68.66	70.34
AT5G12050.1	Thale cress	nucleus	65.97	61.05
CDX91176	Canola	nucleus, plastid	16.72	58.95
CDX70442	Canola	nucleus	67.76	57.61
CDX91175	Canola	plastid	22.99	50.33
CDX85703	Canola	plastid	39.4	50.19
CDY02474	Canola	nucleus	9.25	43.66
CDY10614	Canola	nucleus	31.04	34.32
CDY33081	Canola	nucleus	32.24	33.86
CDY24062	Canola	nucleus	32.54	33.23
CDY33260	Canola	nucleus	33.43	31.82
KRH52238	Soybean	nucleus	36.12	31.43
CDY39086	Canola	nucleus	32.84	31.25
CDY55213	Canola	nucleus	28.36	31.25
CDX97534	Canola	nucleus	30.15	31.17
KRH61567	Soybean	mitochondrion, nucleus	36.12	30.71
Solyc08g062180.1.1	Tomato	nucleus	33.13	28.68
PGSC0003DMT400055964	Potato	nucleus	32.84	28.42
VIT_04s0008g01700.t01	Wine grape	nucleus	35.22	27.76
KRH15613	Soybean	nucleus	32.24	26.67
KRH05403	Soybean	nucleus	32.84	26.19

Protein Annotations

EnsemblPlants:CDX97165	EnsemblPlantsGene:GSBRNA2T00104159001	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2	ProteinID:CDX97165	ProteinID:CDX97165.1
SEG:seg	UniParc:UPI0004EF0114	MapMan:35.1	:	:	:

Description

BnaC09g44600D

Coordinates

chrLK031897:+:980359..981563

Molecular Weight (calculated)

38089.7 Da

IEP (calculated)

9.311

GRAVY (calculated)

-1.000

Length

335 amino acids

Sequence
(BLAST)

001: MHRSRNPSFS STLLDEIYNS IDPKTHKTQS FTGSVNTTKK QSISVTRPVP DRKIHKDRFF SSVSSSSDSN SSIFSSSDTE PSHPKKKSSS RPLCFGPSKT
101: TKPRKTEDKT LFHQNRAFRV SEDYDYEKSE HTRTRRSSSN QKKPKTPASP GVRIVNFINS LFSSNNGSKG HPKKVSCDDE AFVRKPTDYY YPSTTCSSAS
201: SFSRSCLNRS SEKSSDRVKR SVRFSPVNVI VPESRSYVEE EDYLTNGYVR KSVKKNVEGR RSVEEIAREF LRDYHKSHDN GLVKINDFED YEDDDDVASD
301: SSSDLFELDL VGTHHRNMYG DELPVYETTF AGLIL

Best Arabidopsis Sequence Match ( AT5G12050.1 )
(BLAST)

001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL

Arabidopsis Description

Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.