Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46487 | Canola | cytosol, plastid | 100.0 | 100.0 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 70.41 | 70.0 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 50.3 | 53.12 |
| KRH39891 | Soybean | mitochondrion, plastid | 52.07 | 50.0 |
| TraesCS4B01G133500.1 | Wheat | mitochondrion, plastid | 46.15 | 46.99 |
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 44.97 | 45.51 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 44.38 | 44.91 |
| Os12t0143300-01 | Rice | mitochondrion | 29.59 | 44.64 |
| Zm00001d023241_P001 | Maize | plastid | 41.42 | 43.21 |
| Solyc01g088030.2.1 | Tomato | nucleus | 50.89 | 43.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.97 | 42.94 |
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 40.83 | 42.33 |
| PGSC0003DMT400017614 | Potato | plastid | 50.3 | 38.46 |
| Os11t0146550-00 | Rice | plastid | 44.38 | 36.76 |
| HORVU4Hr1G025850.7 | Barley | cytosol | 45.56 | 34.84 |
Protein Annotations
| EnsemblPlants:Bra035963.1 | EnsemblPlants:Bra035963.1-P | EnsemblPlantsGene:Bra035963 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf |
| InterPro:IPR000305 | InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 |
| SEG:seg | UniParc:UPI000253E644 | UniProt:M4F4G3 | MapMan:35.2 | : | : |
Description
AT5G43210 (E=1e-066) | endo/excinuclease amino terminal domain-containing protein
Coordinates
chrScaffold000111:+:29537..30206
Molecular Weight (calculated)
19096.1 Da
IEP (calculated)
11.019
GRAVY (calculated)
-0.630
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRLISGTFP SVKPRDHNPI SKSKTLKTQF PISSSTSSQQ NSKVSNPKSW SVYLILSTKE PIKTYVGITT DFARRLKQHN GEIKGGAKAS SAGRPWLCAC
101: IITGFTCLSK ASSFESKWKI FTRKLPRRKK GEEMSQSEAL LQHRRRALDK VHDSLECSHL QTDWKIATR
101: IITGFTCLSK ASSFESKWKI FTRKLPRRKK GEEMSQSEAL LQHRRRALDK VHDSLECSHL QTDWKIATR
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.