Factsheet for TraesCS4D01G128500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43210.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT5G43210.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT5G43210.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT5G43210.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT5G43210.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT5G43210.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G185100.1	Wheat	mitochondrion, plastid	96.41	96.41
TraesCS4B01G133500.1	Wheat	mitochondrion, plastid	92.81	93.37
EES15547	Sorghum	mitochondrion, nucleus, plastid	73.05	74.85
Zm00001d023241_P001	Maize	plastid	71.26	73.46
Os12t0143300-01	Rice	mitochondrion	48.5	72.32
HORVU4Hr1G025850.7	Barley	cytosol	95.21	71.95
Os11t0146550-00	Rice	plastid	74.25	60.78
VIT_13s0158g00160.t01	Wine grape	plastid	45.51	47.5
GSMUA_Achr11P...	Banana	mitochondrion	49.1	46.33
KRH39891	Soybean	mitochondrion, plastid	48.5	46.02
Bra035963.1-P	Field mustard	cytosol, plastid	44.91	44.38
CDY46487	Canola	cytosol, plastid	44.91	44.38
AT5G43210.1	Thale cress	mitochondrion, nucleus	43.11	42.35
Solyc01g088030.2.1	Tomato	nucleus	49.7	41.5
PGSC0003DMT400017614	Potato	plastid	50.9	38.46

Protein Annotations

EnsemblPlants:TraesCS4D01G128500.1	EnsemblPlantsGene:TraesCS4D01G128500	Gene3D:3.40.1440.10	InterPro:GIY-YIG_endonuc	InterPro:GIY-YIG_endonuc_sf	InterPro:IPR000305
InterPro:IPR035901	PANTHER:PTHR20208	PANTHER:PTHR20208:SF13	PFAM:PF01541	PFscan:PS50164	SEG:seg
SUPFAM:SSF82771	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:112726252..112727955

Molecular Weight (calculated)

18269.0 Da

IEP (calculated)

10.949

GRAVY (calculated)

-0.529

Length

167 amino acids

Sequence
(BLAST)

001: MSLSATFRVA KIPRTTLPPK SCKATPSSVS ASPAPASGDP PPKAAKKKKE AAPWCVYLIA SSLAPRTYVG VTTDFPRRLR QHNGELKGGA KASSAGRPWN
101: LACLVEGFTN RSEACEFESK WKNISKKMTR KRSEPGLNSV LQHREVALSR VKTILDCNHL NIKWHSS

Best Arabidopsis Sequence Match ( AT5G43210.1 )
(BLAST)

001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.