Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004812_P002 | |
| Zm00001d023560_P002 | |
| Zm00001d053016_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43210.1 | Zm00001d004812_P002 | AT4G09570.1 | 19130088 |
| AT5G43210.1 | Zm00001d023560_P002 | AT4G09570.1 | 19130088 |
| AT5G43210.1 | Zm00001d053016_P002 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 90.12 | 89.57 |
| Os12t0143300-01 | Rice | mitochondrion | 50.62 | 73.21 |
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 74.69 | 72.46 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 73.46 | 71.26 |
| TraesCS4B01G133500.1 | Wheat | mitochondrion, plastid | 71.6 | 69.88 |
| Os11t0146550-00 | Rice | plastid | 75.93 | 60.29 |
| HORVU4Hr1G025850.7 | Barley | cytosol | 75.31 | 55.2 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 46.91 | 47.5 |
| GSMUA_Achr11P... | Banana | mitochondrion | 51.85 | 47.46 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 46.91 | 44.71 |
| KRH39891 | Soybean | mitochondrion, plastid | 46.3 | 42.61 |
| Solyc01g088030.2.1 | Tomato | nucleus | 51.23 | 41.5 |
| Bra035963.1-P | Field mustard | cytosol, plastid | 43.21 | 41.42 |
| CDY46487 | Canola | cytosol, plastid | 43.21 | 41.42 |
| PGSC0003DMT400017614 | Potato | plastid | 52.47 | 38.46 |
Protein Annotations
| EnsemblPlants:Zm00001d023241_P001 | EnsemblPlants:Zm00001d023241_T001 | EnsemblPlantsGene:Zm00001d023241 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf |
| InterPro:IPR000305 | InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 |
| ProteinID:AQK38696.1 | SEG:seg | SUPFAM:SSF82771 | UniParc:UPI0002215789 | UniProt:K7TLM0 | MapMan:35.2 |
Description
Excinuclease ABC C subunit N-terminal
Coordinates
chr10:+:1287311..1289500
Molecular Weight (calculated)
17729.3 Da
IEP (calculated)
10.978
GRAVY (calculated)
-0.452
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTAAFRAT KIPRALPPKC GEPAASSSAS ASGDPPPGAA KSTKAPPPWC VYLIASSRIR RTYVGVTTDF PRRLRQHNGE LKGGAKASSA GRPWNLACLV
101: EGFANRSEAC EFESKWKIVS RKIARKRTEL SMKSVLQHRE AALSRVETFM DCSHLKIKWQ SS
101: EGFANRSEAC EFESKWKIVS RKIARKRTEL SMKSVLQHRE AALSRVETFM DCSHLKIKWQ SS
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.