Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43210.1 | HORVU4Hr1G019530.1 | AT4G09570.1 | 19130088 |
| AT5G43210.1 | HORVU5Hr1G032550.3 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 71.95 | 95.21 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 71.95 | 95.21 |
| TraesCS4B01G133500.1 | Wheat | mitochondrion, plastid | 71.04 | 94.58 |
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 56.11 | 76.07 |
| Zm00001d023241_P001 | Maize | plastid | 55.2 | 75.31 |
| Os12t0143300-01 | Rice | mitochondrion | 37.56 | 74.11 |
| Os11t0146550-00 | Rice | plastid | 59.28 | 64.22 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 34.84 | 48.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.56 | 46.89 |
| KRH39891 | Soybean | mitochondrion, plastid | 36.65 | 46.02 |
| Bra035963.1-P | Field mustard | cytosol, plastid | 34.84 | 45.56 |
| CDY46487 | Canola | cytosol, plastid | 34.84 | 45.56 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 33.03 | 42.94 |
| Solyc01g088030.2.1 | Tomato | nucleus | 38.01 | 42.0 |
| PGSC0003DMT400017614 | Potato | plastid | 38.91 | 38.91 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G025850.7 | EnsemblPlantsGene:HORVU4Hr1G025850 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | InterPro:IPR000305 |
| InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 | SEG:seg |
| SUPFAM:SSF82771 | UniParc:UPI000B48320B | UniProt:A0A287NLF6 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:152682436..152684620
Molecular Weight (calculated)
24381.2 Da
IEP (calculated)
10.934
GRAVY (calculated)
-0.561
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: ERNTGVHFVS AHEQQALGGP LIRSPHSLQI RKFPPWMHPF PWRGGPPVAG EVRDEMSLSA TFRVAKIPRT ALPPKSCKAT PSSVSASPAS ASGDPPPKAA
101: KKKEAAPWCV YLIASSRVPR TYVGVTTDFP RRLRQHNGEL KGGAKASSAG RPWNLACLVE GFTNRSEACE FESKWKNISK KMTRKRSEPG LNAVLQHREV
201: ALSRVKTFLD CDHLNIKWHS S
101: KKKEAAPWCV YLIASSRVPR TYVGVTTDFP RRLRQHNGEL KGGAKASSAG RPWNLACLVE GFTNRSEACE FESKWKNISK KMTRKRSEPG LNAVLQHREV
201: ALSRVKTFLD CDHLNIKWHS S
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.