Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43210.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT5G43210.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088030.2.1 | Tomato | nucleus | 71.95 | 79.5 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 44.34 | 61.25 |
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 38.91 | 52.76 |
| Zm00001d023241_P001 | Maize | plastid | 38.46 | 52.47 |
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 39.37 | 52.1 |
| TraesCS4B01G133500.1 | Wheat | mitochondrion, plastid | 38.91 | 51.81 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 38.46 | 50.9 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 38.91 | 50.59 |
| KRH39891 | Soybean | mitochondrion, plastid | 40.27 | 50.57 |
| Bra035963.1-P | Field mustard | cytosol, plastid | 38.46 | 50.3 |
| CDY46487 | Canola | cytosol, plastid | 38.46 | 50.3 |
| Os12t0143300-01 | Rice | mitochondrion | 25.34 | 50.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 36.65 | 45.76 |
| Os11t0146550-00 | Rice | plastid | 38.46 | 41.67 |
| HORVU4Hr1G025850.7 | Barley | cytosol | 38.91 | 38.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017614 | EnsemblPlantsGene:PGSC0003DMG400006832 | EntrezGene:102598472 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf |
| InterPro:IPR000305 | InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 |
| PGSC:PGSC0003DMG400006832 | RefSeq:XP_006345391.1 | SEG:seg | SUPFAM:SSF82771 | UniParc:UPI0002967E7F | UniProt:M1A969 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006832]
Coordinates
chr1:-:64769322..64774259
Molecular Weight (calculated)
24696.2 Da
IEP (calculated)
10.702
GRAVY (calculated)
-0.826
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRPLSTIFK STKPHILKPP NPSNFESLKP TNLKVPSSSN PVASSSSCSK SKKSRKSDAN SQQSSGNDPE LLTSPASNST KFSNSKKKRS LWCVYLILST
101: NPPIKTYVGV TTNFSRRLKE HNGELKGGAK ASRSGRPWIC ACLIRGFKGR SEACAFESKW KQISRKLPRK RKSTTEEQEQ EQEPEDNGSL ALLQHRHAAL
201: DRVQSLIDCS DLNIDWRSNF F
101: NPPIKTYVGV TTNFSRRLKE HNGELKGGAK ASRSGRPWIC ACLIRGFKGR SEACAFESKW KQISRKLPRK RKSTTEEQEQ EQEPEDNGSL ALLQHRHAAL
201: DRVQSLIDCS DLNIDWRSNF F
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.