Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 93.37 | 92.81 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 93.37 | 92.81 |
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 71.69 | 73.01 |
| Zm00001d023241_P001 | Maize | plastid | 69.88 | 71.6 |
| HORVU4Hr1G025850.7 | Barley | cytosol | 94.58 | 71.04 |
| Os12t0143300-01 | Rice | mitochondrion | 46.99 | 69.64 |
| Os11t0146550-00 | Rice | plastid | 71.69 | 58.33 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 46.99 | 48.75 |
| GSMUA_Achr11P... | Banana | mitochondrion | 49.4 | 46.33 |
| Bra035963.1-P | Field mustard | cytosol, plastid | 46.99 | 46.15 |
| CDY46487 | Canola | cytosol, plastid | 46.99 | 46.15 |
| KRH39891 | Soybean | mitochondrion, plastid | 48.19 | 45.45 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 43.98 | 42.94 |
| Solyc01g088030.2.1 | Tomato | nucleus | 50.6 | 42.0 |
| PGSC0003DMT400017614 | Potato | plastid | 51.81 | 38.91 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G133500.1 | EnsemblPlantsGene:TraesCS4B01G133500 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | InterPro:IPR000305 |
| InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 | SEG:seg |
| SUPFAM:SSF82771 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:173176750..173180124
Molecular Weight (calculated)
18302.1 Da
IEP (calculated)
11.104
GRAVY (calculated)
-0.521
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSATFRVA KIPRATLPPK SCKVTPSSVS ASPASTSGDP PPKAVKKKKE AAPWCVYLIA SRVPRTYVGV TTDFPRRLRQ HNGELKGGAK ASSAGRPWNL
101: ACLVQGFTNR SEACEFESKW KNISKKMTRK RSEPGLNAVL QHREVALSRV KTFLDCNHLN INWHSS
101: ACLVQGFTNR SEACEFESKW KNISKKMTRK RSEPGLNAVL QHREVALSRV KTFLDCNHLN INWHSS
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.