Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43210.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT5G43210.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017614 | Potato | plastid | 79.5 | 71.95 |
| VIT_13s0158g00160.t01 | Wine grape | plastid | 49.0 | 61.25 |
| AT5G43210.1 | Thale cress | mitochondrion, nucleus | 44.5 | 52.35 |
| KRH39891 | Soybean | mitochondrion, plastid | 46.0 | 52.27 |
| Zm00001d023241_P001 | Maize | plastid | 41.5 | 51.23 |
| Os12t0143300-01 | Rice | mitochondrion | 28.5 | 50.89 |
| Bra035963.1-P | Field mustard | cytosol, plastid | 43.0 | 50.89 |
| CDY46487 | Canola | cytosol, plastid | 43.0 | 50.89 |
| TraesCS4B01G133500.1 | Wheat | mitochondrion, plastid | 42.0 | 50.6 |
| EES15547 | Sorghum | mitochondrion, nucleus, plastid | 41.0 | 50.31 |
| TraesCS4A01G185100.1 | Wheat | mitochondrion, plastid | 41.5 | 49.7 |
| TraesCS4D01G128500.1 | Wheat | mitochondrion, plastid | 41.5 | 49.7 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.5 | 46.89 |
| Os11t0146550-00 | Rice | plastid | 43.0 | 42.16 |
| HORVU4Hr1G025850.7 | Barley | cytosol | 42.0 | 38.01 |
Protein Annotations
| EnsemblPlants:Solyc01g088030.2.1 | EnsemblPlantsGene:Solyc01g088030.2 | Gene3D:3.40.1440.10 | InterPro:GIY-YIG_endonuc | InterPro:GIY-YIG_endonuc_sf | InterPro:IPR000305 |
| InterPro:IPR035901 | PANTHER:PTHR20208 | PANTHER:PTHR20208:SF13 | PFAM:PF01541 | PFscan:PS50164 | SEG:seg |
| SUPFAM:SSF82771 | UniParc:UPI000276358A | UniProt:K4AYJ3 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1:+:82884826..82888195
Molecular Weight (calculated)
22445.7 Da
IEP (calculated)
10.510
GRAVY (calculated)
-0.718
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPLSTIFK STKPHILKPP KPSNFESNLK VPSSSSCSTS RKSDANSQQS YPELLTSPAS NSTEFSNSKK KKSLWCVYLI LSTNPPIKTY VGVTTNFCRR
101: LKEHNGELKG GAKASRSGRP WICACLIRGF KGRSEACAFE SKWKQISRKL PRKRKSSTEE QEPEDNGSLA LLQHRHAALD RVQSLIDCSD LNIDWRSNFL
101: LKEHNGELKG GAKASRSGRP WICACLIRGF KGRSEACAFE SKWKQISRKL PRKRKSSTEE QEPEDNGSLA LLQHRHAALD RVQSLIDCSD LNIDWRSNFL
001: MTRLLSRTFP SVKLRDSNPK APEFKNLKNS QTQVPIPSSS SPQENSKIPK SKSWSVYLIL STTEPIKTYV GITTDFSRRL KQHNGEIRGG AKASSAGRPW
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
101: LCACIITGFT CLSQASSFES KWKIFTRKLP RRKKDEDMSQ SDALLQHRRR ALNKVEESLD CSYLETDWKI
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FHS4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.