Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37340 | Canola | nucleus | 64.67 | 41.99 |
| CDY40403 | Canola | nucleus | 63.33 | 40.95 |
| CDY37345 | Canola | nucleus | 61.33 | 39.83 |
| AT2G01100.3 | Thale cress | nucleus | 59.33 | 36.03 |
| CDY17697 | Canola | nucleus | 52.0 | 33.91 |
| Zm00001d040118_P001 | Maize | nucleus | 40.67 | 24.7 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 38.0 | 24.15 |
| KXG32043 | Sorghum | nucleus | 42.67 | 23.19 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 39.33 | 22.69 |
| Zm00001d008500_P001 | Maize | nucleus | 41.33 | 22.55 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 38.67 | 22.31 |
| Os01t0120700-01 | Rice | nucleus | 42.0 | 22.11 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 38.0 | 22.01 |
| KRH35818 | Soybean | nucleus | 39.33 | 17.82 |
| KRG90949 | Soybean | nucleus | 39.33 | 17.72 |
| Solyc05g008440.1.1 | Tomato | nucleus | 38.67 | 17.63 |
| PGSC0003DMT400078368 | Potato | nucleus | 38.67 | 17.42 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 39.33 | 15.01 |
Protein Annotations
| EnsemblPlants:CDX77806 | EnsemblPlantsGene:GSBRNA2T00128851001 | PANTHER:PTHR37715 | ProteinID:CDX77806 | ProteinID:CDX77806.1 | SEG:seg |
| UniParc:UPI0004EF489A | MapMan:35.2 | : | : | : | : |
Description
BnaC07g20600D
Coordinates
chrLK031812:+:1909363..1910638
Molecular Weight (calculated)
17683.9 Da
IEP (calculated)
11.092
GRAVY (calculated)
-1.598
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKKFMQMV EEKKRQILEK KEAPLKWEQK LEAAAKAAGT KEKNSEVRRK SRRTHSKHRR HAHSDSDDSN RRKDKKSRRH KRRLSSRSVD SSDEYESGSE
101: DELRKTIKHH RSQALLRDVN NARTQGSEYK YLRKKASLVG HQATPMSLQF
101: DELRKTIKHH RSQALLRDVN NARTQGSEYK YLRKKASLVG HQATPMSLQF
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.