Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37345 | Canola | nucleus | 88.36 | 88.74 |
| CDY37340 | Canola | nucleus | 87.5 | 87.88 |
| Bra014343.1-P | Field mustard | nucleus | 86.21 | 86.58 |
| CDY17697 | Canola | nucleus | 66.81 | 67.39 |
| AT2G01100.3 | Thale cress | nucleus | 71.55 | 67.21 |
| CDX77806 | Canola | nucleus | 40.95 | 63.33 |
| Os01t0120700-01 | Rice | nucleus | 45.26 | 36.84 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 40.95 | 36.54 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 40.52 | 36.15 |
| Zm00001d040118_P001 | Maize | nucleus | 38.36 | 36.03 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 40.09 | 35.91 |
| KXG32043 | Sorghum | nucleus | 40.95 | 34.42 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 34.48 | 33.9 |
| Zm00001d008500_P001 | Maize | nucleus | 40.09 | 33.82 |
| KRH35818 | Soybean | nucleus | 38.79 | 27.19 |
| Solyc05g008440.1.1 | Tomato | nucleus | 37.07 | 26.14 |
| KRG90949 | Soybean | nucleus | 37.5 | 26.13 |
| PGSC0003DMT400078368 | Potato | nucleus | 36.21 | 25.23 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 37.93 | 22.39 |
Protein Annotations
| EnsemblPlants:CDY40403 | EnsemblPlantsGene:GSBRNA2T00069606001 | PANTHER:PTHR37715 | ProteinID:CDY40403 | ProteinID:CDY40403.1 | SEG:seg |
| UniParc:UPI0004EDDD3C | UniProt:A0A078HUF6 | MapMan:35.2 | : | : | : |
Description
BnaA02g27170DBnaA02g27170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUF6]
Coordinates
chrLK032469:-:275399..277310
Molecular Weight (calculated)
27765.7 Da
IEP (calculated)
11.031
GRAVY (calculated)
-2.112
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCKKFMQMV EEKKRQILEK KEAPLKWEQK LEAAVKAAET KDKRSKKRRR QRAASESSSE SDSSTDVRRK SRRTHSKHRR HAHSDSDDSD KRKDRRSRRH
101: KKRSSSSRDD SSDEYESGSE DELRMKIRHH RRYKSHSSRQ TSDDDYDEDV RRRQVKHHRH GEVFTSSDSE EEIGGGRRKH RHNRGSAASS DSDSEVRRKN
201: RKRREHKRYR WAESSSEADD GARRRRGHHK HD
101: KKRSSSSRDD SSDEYESGSE DELRMKIRHH RRYKSHSSRQ TSDDDYDEDV RRRQVKHHRH GEVFTSSDSE EEIGGGRRKH RHNRGSAASS DSDSEVRRKN
201: RKRREHKRYR WAESSSEADD GARRRRGHHK HD
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.