Subcellular Localization
min:
: max
Winner_takes_all: vacuole, endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90949 | Soybean | nucleus | 38.93 | 45.95 |
| KRH35818 | Soybean | nucleus | 38.68 | 45.92 |
| PGSC0003DMT400078368 | Potato | nucleus | 37.91 | 44.74 |
| Solyc05g008440.1.1 | Tomato | nucleus | 36.39 | 43.47 |
| Os01t0120700-01 | Rice | nucleus | 30.03 | 41.4 |
| Zm00001d040118_P001 | Maize | nucleus | 25.95 | 41.3 |
| KXG32043 | Sorghum | nucleus | 28.75 | 40.94 |
| CDX77806 | Canola | nucleus | 15.01 | 39.33 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 25.95 | 39.23 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 25.7 | 39.0 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 23.16 | 38.56 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 25.45 | 38.46 |
| CDY40403 | Canola | nucleus | 22.39 | 37.93 |
| CDY37345 | Canola | nucleus | 21.88 | 37.23 |
| Bra024906.1-P | Field mustard | nucleus | 21.63 | 36.96 |
| CDY17697 | Canola | nucleus | 21.12 | 36.09 |
| Zm00001d008500_P001 | Maize | nucleus | 25.19 | 36.0 |
| CDY37340 | Canola | nucleus | 21.12 | 35.93 |
| Bra014343.1-P | Field mustard | nucleus | 20.87 | 35.5 |
| AT2G01100.3 | Thale cress | nucleus | 21.63 | 34.41 |
Protein Annotations
| ArrayExpress:VIT_01s0011g04510 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g04510.t01 | EnsemblPlantsGene:VIT_01s0011g04510 | EntrezGene:100250797 | EntrezGene:LOC100250797 |
| ncoils:Coil | PANTHER:PTHR37715 | ProteinID:CCB50857 | ProteinID:CCB50857.1 | RefSeq:XP_002283977 | RefSeq:XP_002283977.1 |
| RefSeq:XP_003631210 | RefSeq:XP_003631210.1 | RefSeq:XP_003631211 | RefSeq:XP_003631211.1 | SEG:seg | UniParc:UPI0002108D82 |
| UniProt:F6HFK8 | wikigene:100250797 | wikigene:LOC100250797 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1:-:4091419..4094089
Molecular Weight (calculated)
45413.2 Da
IEP (calculated)
10.668
GRAVY (calculated)
-1.674
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDVSRTKA SHRKVKVQAL ALALAKESGI IIPKLDLYPL LFPLLRVFAY KVLSLFLYLY GLQEVHPKRA LEKKEAPLKW EQKLEAASKA QAEAEAKERK
101: LKAARHKRRS VSESDSDSDS DSSDEGRKTT KRAHKKHRKH GHSDSGENEK RKEKKSRRRR KRHSSSDDNS DEMKSNSEED RKRKKRVQRK HKHRDSRSDS
201: SASDSSSNED DGAIRRKSRS KHQKRHRRSE SGASDSSSDE DNVASKRSHH VKRHKRHRRS ESSSTSDSSS DEDGVTRRRN HAKHHKHHRR SHSVDSKSSD
301: GGAHGHDRRG QSLEKSSDDN YEEAGKSSKH RKCGHHHHHH HHHHKQRHHH SDEEKIDQIQ HSGELNGKHL EHSVMKLDAY DKDATHDFQK VLG
101: LKAARHKRRS VSESDSDSDS DSSDEGRKTT KRAHKKHRKH GHSDSGENEK RKEKKSRRRR KRHSSSDDNS DEMKSNSEED RKRKKRVQRK HKHRDSRSDS
201: SASDSSSNED DGAIRRKSRS KHQKRHRRSE SGASDSSSDE DNVASKRSHH VKRHKRHRRS ESSSTSDSSS DEDGVTRRRN HAKHHKHHRR SHSVDSKSSD
301: GGAHGHDRRG QSLEKSSDDN YEEAGKSSKH RKCGHHHHHH HHHHKQRHHH SDEEKIDQIQ HSGELNGKHL EHSVMKLDAY DKDATHDFQK VLG
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.