Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32043 | Sorghum | nucleus | 77.82 | 77.54 |
| Zm00001d040118_P001 | Maize | nucleus | 67.27 | 74.9 |
| Os01t0120700-01 | Rice | nucleus | 62.91 | 60.7 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 53.09 | 56.15 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 52.73 | 55.98 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 52.0 | 55.0 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 46.91 | 54.66 |
| CDX77806 | Canola | nucleus | 22.55 | 41.33 |
| CDY37345 | Canola | nucleus | 34.18 | 40.69 |
| CDY40403 | Canola | nucleus | 33.82 | 40.09 |
| CDY37340 | Canola | nucleus | 33.45 | 39.83 |
| Bra014343.1-P | Field mustard | nucleus | 32.36 | 38.53 |
| Bra024906.1-P | Field mustard | nucleus | 32.0 | 38.26 |
| AT2G01100.3 | Thale cress | nucleus | 34.18 | 38.06 |
| CDY17697 | Canola | nucleus | 31.64 | 37.83 |
| PGSC0003DMT400078368 | Potato | nucleus | 41.45 | 34.23 |
| Solyc05g008440.1.1 | Tomato | nucleus | 40.36 | 33.74 |
| KRH35818 | Soybean | nucleus | 37.82 | 31.42 |
| KRG90949 | Soybean | nucleus | 37.45 | 30.93 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 36.0 | 25.19 |
Protein Annotations
| EMBL:BT039133 | EMBL:BT064758 | EnsemblPlants:Zm00001d008500_P001 | EnsemblPlants:Zm00001d008500_T001 | EnsemblPlantsGene:Zm00001d008500 | EntrezGene:100272661 |
| ncoils:Coil | PANTHER:PTHR37715 | ProteinID:AQK89999.1 | SEG:seg | UniParc:UPI00017B75AD | UniProt:B4FPU5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Sarcoplasmic reticulum histidine-rich calcium-binding protein
Coordinates
chr8:-:10485507..10486334
Molecular Weight (calculated)
32867.2 Da
IEP (calculated)
10.783
GRAVY (calculated)
-2.252
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKKFLQLV EEKKRRILEK KEAPLKWQQK LEAAVNVKAD AEAKAKKLKS RKHRRRGDSS SDSDSDYDSD VDRKHRRRKD RRRNKKHEHS DSDDARRGKR
101: RSKKGSDSSD ESNREYESGS EEEHTKKKRL HRRRHHRHSS RSDSEDNSDE EERRSAKDHS QPRRRHHQSS DDGSDKVRLR HGKRLRSSDE NARPDSNSHK
201: HLRSQSLEES SDDRDDDGPE KIRNGKRYHK NHHRHHHHHR HHRHHHERHN NSAEPNDRRQ VLKDDQRALE GSSAD
101: RSKKGSDSSD ESNREYESGS EEEHTKKKRL HRRRHHRHSS RSDSEDNSDE EERRSAKDHS QPRRRHHQSS DDGSDKVRLR HGKRLRSSDE NARPDSNSHK
201: HLRSQSLEES SDDRDDDGPE KIRNGKRYHK NHHRHHHHHR HHRHHHERHN NSAEPNDRRQ VLKDDQRALE GSSAD
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.