Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G024900.1 | Wheat | nucleus | 65.26 | 71.54 |
| KXG32043 | Sorghum | nucleus | 68.77 | 71.01 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 64.56 | 70.77 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 57.89 | 69.92 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 63.51 | 69.88 |
| Zm00001d040118_P001 | Maize | nucleus | 55.44 | 63.97 |
| Zm00001d008500_P001 | Maize | nucleus | 60.7 | 62.91 |
| CDY37340 | Canola | nucleus | 37.19 | 45.89 |
| CDY37345 | Canola | nucleus | 36.84 | 45.45 |
| CDY40403 | Canola | nucleus | 36.84 | 45.26 |
| Bra024906.1-P | Field mustard | nucleus | 35.44 | 43.91 |
| CDY17697 | Canola | nucleus | 35.44 | 43.91 |
| Bra014343.1-P | Field mustard | nucleus | 35.44 | 43.72 |
| CDX77806 | Canola | nucleus | 22.11 | 42.0 |
| AT2G01100.3 | Thale cress | nucleus | 35.09 | 40.49 |
| Solyc05g008440.1.1 | Tomato | nucleus | 40.7 | 35.26 |
| PGSC0003DMT400078368 | Potato | nucleus | 39.65 | 33.93 |
| KRH35818 | Soybean | nucleus | 37.19 | 32.02 |
| KRG90949 | Soybean | nucleus | 36.14 | 30.93 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 41.4 | 30.03 |
Protein Annotations
| EMBL:AK067227 | EnsemblPlants:Os01t0120700-01 | EnsemblPlantsGene:Os01g0120700 | EntrezGene:4326037 | ncoils:Coil | PANTHER:PTHR37715 |
| ProteinID:BAB07941.2 | ProteinID:BAB17164.1 | ProteinID:BAF03784.1 | ProteinID:BAS70123.1 | ProteinID:EAZ10338.1 | RefSeq:XP_015640896.1 |
| RefSeq:XP_015640904.1 | SEG:seg | UniParc:UPI00000A2092 | UniProt:Q9LGP3 | MapMan:35.2 | : |
Description
Similar to sarcoplasmic reticulum histidine-rich calcium-binding protein. (Os01t0120700-01)
Coordinates
chr1:-:1168737..1171126
Molecular Weight (calculated)
33505.5 Da
IEP (calculated)
10.706
GRAVY (calculated)
-2.335
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKKFLQLL EEKKKRILEK KEAPLKWEQK LEAAAKAKAD AEAKEKKLKS RKHRRRGHSS SDSESDSDSD GDRKHRKRKD RKRHRKHGHS DSDEAKRHKR
101: RSKRRSSDSS DDTDSDEYDS GSEEENRRKK RSHRRKHRRH SSRSDSDASD YSSDDEERRS SKKDHSSSRS HRHHHHRSSG DDSGSESEER GRSRHKKHHR
201: SSDEDATSDS NNHKHRRSRS LEESSDDAAA GEYEKVRNGK RPHKTGHHRH HHRHHHHHHD HRSSSEPNDK KRQDGQKALE GGNVD
101: RSKRRSSDSS DDTDSDEYDS GSEEENRRKK RSHRRKHRRH SSRSDSDASD YSSDDEERRS SKKDHSSSRS HRHHHHRSSG DDSGSESEER GRSRHKKHHR
201: SSDEDATSDS NNHKHRRSRS LEESSDDAAA GEYEKVRNGK RPHKTGHHRH HHRHHHHHHD HRSSSEPNDK KRQDGQKALE GGNVD
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.