Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32043 | Sorghum | nucleus | 81.78 | 73.19 |
| Zm00001d008500_P001 | Maize | nucleus | 74.9 | 67.27 |
| Os01t0120700-01 | Rice | nucleus | 63.97 | 55.44 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 57.09 | 54.23 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 56.28 | 53.46 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 55.47 | 52.9 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 50.2 | 52.54 |
| CDX77806 | Canola | nucleus | 24.7 | 40.67 |
| CDY37340 | Canola | nucleus | 36.84 | 39.39 |
| CDY37345 | Canola | nucleus | 36.03 | 38.53 |
| CDY40403 | Canola | nucleus | 36.03 | 38.36 |
| Bra014343.1-P | Field mustard | nucleus | 34.41 | 36.8 |
| AT2G01100.3 | Thale cress | nucleus | 36.03 | 36.03 |
| CDY17697 | Canola | nucleus | 32.79 | 35.22 |
| Bra024906.1-P | Field mustard | nucleus | 31.98 | 34.35 |
| Solyc05g008440.1.1 | Tomato | nucleus | 42.91 | 32.22 |
| PGSC0003DMT400078368 | Potato | nucleus | 42.11 | 31.23 |
| KRG90949 | Soybean | nucleus | 38.06 | 28.23 |
| KRH35818 | Soybean | nucleus | 36.44 | 27.19 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 41.3 | 25.95 |
Protein Annotations
| EMBL:BT060991 | EMBL:EU965127 | EnsemblPlants:Zm00001d040118_P001 | EnsemblPlants:Zm00001d040118_T001 | EnsemblPlantsGene:Zm00001d040118 | EntrezGene:100283557 |
| ncoils:Coil | ProteinID:ONM30567.1 | SEG:seg | UniParc:UPI000182DA07 | UniProt:B6TJG2 | MapMan:35.2 |
Description
Sarcoplasmic reticulum histidine-rich calcium-binding protein
Coordinates
chr3:-:28238999..28239742
Molecular Weight (calculated)
29634.6 Da
IEP (calculated)
10.932
GRAVY (calculated)
-2.255
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKRFLHLV EEKKRRVLEK KEAPLKWEQK LETAAKAKVD AEAKVKKLNS RKHRRRGDLS SDSDSDYGSD VDRKHLKRKN RRRNKKHEHS DSDDARRRNR
101: RSRRSTDSSD ESNSEYETRS EEERPRKKRS HRRRHHRHSS KSDSENYSSD EEQRRPAKDH SQSRRRHHRS SDDDSDKDKV KSRHGKGLRS RDEDARADFN
201: SNKHLRSQSL EESSDDRDAD ESEKMRNGKR SHKNGGHRHH HHRHHHE
101: RSRRSTDSSD ESNSEYETRS EEERPRKKRS HRRRHHRHSS KSDSENYSSD EEQRRPAKDH SQSRRRHHRS SDDDSDKDKV KSRHGKGLRS RDEDARADFN
201: SNKHLRSQSL EESSDDRDAD ESEKMRNGKR SHKNGGHRHH HHRHHHE
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.