Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g008440.1.1 | Tomato | nucleus | 72.97 | 73.86 |
| Zm00001d040118_P001 | Maize | nucleus | 31.23 | 42.11 |
| Zm00001d008500_P001 | Maize | nucleus | 34.23 | 41.45 |
| KXG32043 | Sorghum | nucleus | 33.63 | 40.58 |
| Os01t0120700-01 | Rice | nucleus | 33.93 | 39.65 |
| KRH35818 | Soybean | nucleus | 39.04 | 39.27 |
| CDX77806 | Canola | nucleus | 17.42 | 38.67 |
| KRG90949 | Soybean | nucleus | 38.44 | 38.44 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 29.73 | 38.08 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 44.74 | 37.91 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 29.43 | 37.69 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 26.43 | 37.29 |
| CDY37345 | Canola | nucleus | 25.53 | 36.8 |
| CDY37340 | Canola | nucleus | 25.53 | 36.8 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 28.53 | 36.68 |
| CDY40403 | Canola | nucleus | 25.23 | 36.21 |
| AT2G01100.3 | Thale cress | nucleus | 26.43 | 35.63 |
| Bra014343.1-P | Field mustard | nucleus | 23.72 | 34.2 |
| CDY17697 | Canola | nucleus | 22.82 | 33.04 |
| Bra024906.1-P | Field mustard | nucleus | 22.52 | 32.61 |
Protein Annotations
| EMBL:DQ207880 | EnsemblPlants:PGSC0003DMT400078368 | EnsemblPlantsGene:PGSC0003DMG400030513 | EntrezGene:102600559 | PANTHER:PTHR37715 | PGSC:PGSC0003DMG400030513 |
| ProteinID:ABA81888 | ProteinID:ABA81888.1 | RefSeq:XP_006344205.1 | RefSeq:XP_006344206.1 | SEG:seg | UniParc:UPI000294AAF7 |
| UniProt:M1CZZ3 | MapMan:35.2 | : | : | : | : |
Description
Sarcoplasmic reticulum histidine-rich calcium-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030513]
Coordinates
chr5:-:3819129..3821230
Molecular Weight (calculated)
39104.2 Da
IEP (calculated)
10.550
GRAVY (calculated)
-2.170
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKKFMQLV EEKKKRALEK KEGHLKWEQK LEASANLKSD AEAGEKTAAK HKRKSDSGSD SGSDTDSEYE KKKSTRKSHK KHRKHHSSNL VDLDRKDKKS
101: KRKPKRRSSD SGDDSCREYD GDSEEERRRK KQGHKKRRHH DRYSDYNSSD SSDDEDVGRK HHSKHHKRHR RSQPNGSESS SDDDHVAGRK RSNAKHHKRH
201: GRLDSDAPVS SSDEEKVNRS NHGKHKKRHH RPHSHDSRSS DPEDFRHERS RFLGKSSDEN EELDRKDKHR KNHHRHGHHH HHHSNHTHRR SVEVSKDNHQ
301: PHDKKERNGE RVDHTSEMLK ESDNNGARVI QNA
101: KRKPKRRSSD SGDDSCREYD GDSEEERRRK KQGHKKRRHH DRYSDYNSSD SSDDEDVGRK HHSKHHKRHR RSQPNGSESS SDDDHVAGRK RSNAKHHKRH
201: GRLDSDAPVS SSDEEKVNRS NHGKHKKRHH RPHSHDSRSS DPEDFRHERS RFLGKSSDEN EELDRKDKHR KNHHRHGHHH HHHSNHTHRR SVEVSKDNHQ
301: PHDKKERNGE RVDHTSEMLK ESDNNGARVI QNA
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.