Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078368 | Potato | nucleus | 73.86 | 72.97 |
| Zm00001d040118_P001 | Maize | nucleus | 32.22 | 42.91 |
| KXG32043 | Sorghum | nucleus | 34.65 | 41.3 |
| Os01t0120700-01 | Rice | nucleus | 35.26 | 40.7 |
| Zm00001d008500_P001 | Maize | nucleus | 33.74 | 40.36 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 31.0 | 39.23 |
| CDX77806 | Canola | nucleus | 17.63 | 38.67 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 30.4 | 38.46 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 30.09 | 38.22 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 27.36 | 38.14 |
| CDY37340 | Canola | nucleus | 26.75 | 38.1 |
| CDY37345 | Canola | nucleus | 26.75 | 38.1 |
| KRH35818 | Soybean | nucleus | 37.69 | 37.46 |
| KRG90949 | Soybean | nucleus | 37.69 | 37.24 |
| CDY40403 | Canola | nucleus | 26.14 | 37.07 |
| Bra014343.1-P | Field mustard | nucleus | 25.84 | 36.8 |
| AT2G01100.3 | Thale cress | nucleus | 27.36 | 36.44 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 43.47 | 36.39 |
| CDY17697 | Canola | nucleus | 23.71 | 33.91 |
| Bra024906.1-P | Field mustard | nucleus | 23.4 | 33.48 |
Protein Annotations
| EnsemblPlants:Solyc05g008440.1.1 | EnsemblPlantsGene:Solyc05g008440.1 | PANTHER:PTHR37715 | SEG:seg | UniParc:UPI000276649A | UniProt:K4BX18 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:2797431..2798420
Molecular Weight (calculated)
38566.6 Da
IEP (calculated)
10.611
GRAVY (calculated)
-2.129
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKKFMQLV EEKKKRALEK KEGHLKWEQK LEASAKGKSD AEAGEKTKAA KHKRKSVSGS DSGSDTDSEY EKKKSTRKSH KKHRKHHSSD LVDLDRKDKK
101: SKRKPKRRSS DSSDDSCREY DGNLEEDRRR KKRGHKKHRH HDRYSDSSDS SDDEDVGRKH HSKHHKRHRR SQPNESESSS DDDHVAARKR SNSKHHKRHG
201: RLDSDASVSS SDEEKVNRRN HGKHKKRHHR PHSHDSRSSD PEDFRHERSR FFGKSSDENE ELDRKDKHSK NHHRHGHHHP NHTHRHSVEV SKDNHQPHDR
301: KERNGERVDH TSEVLNVSDN SGARVTQNA
101: SKRKPKRRSS DSSDDSCREY DGNLEEDRRR KKRGHKKHRH HDRYSDSSDS SDDEDVGRKH HSKHHKRHRR SQPNESESSS DDDHVAARKR SNSKHHKRHG
201: RLDSDASVSS SDEEKVNRRN HGKHKKRHHR PHSHDSRSSD PEDFRHERSR FFGKSSDENE ELDRKDKHSK NHHRHGHHHP NHTHRHSVEV SKDNHQPHDR
301: KERNGERVDH TSEVLNVSDN SGARVTQNA
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.