Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37345 | Canola | nucleus | 94.81 | 94.81 |
| Bra014343.1-P | Field mustard | nucleus | 92.21 | 92.21 |
| CDY40403 | Canola | nucleus | 87.88 | 87.5 |
| AT2G01100.3 | Thale cress | nucleus | 73.59 | 68.83 |
| CDY17697 | Canola | nucleus | 67.53 | 67.83 |
| CDX77806 | Canola | nucleus | 41.99 | 64.67 |
| HORVU3Hr1G006250.1 | Barley | nucleus | 42.42 | 37.84 |
| TraesCS3B01G019900.1 | Wheat | nucleus | 41.99 | 37.31 |
| Os01t0120700-01 | Rice | nucleus | 45.89 | 37.19 |
| TraesCS3A01G024900.1 | Wheat | nucleus | 41.56 | 36.92 |
| Zm00001d040118_P001 | Maize | nucleus | 39.39 | 36.84 |
| TraesCS3D01G021200.1 | Wheat | nucleus | 35.93 | 35.17 |
| KXG32043 | Sorghum | nucleus | 41.99 | 35.14 |
| Zm00001d008500_P001 | Maize | nucleus | 39.83 | 33.45 |
| Solyc05g008440.1.1 | Tomato | nucleus | 38.1 | 26.75 |
| KRH35818 | Soybean | nucleus | 38.1 | 26.59 |
| PGSC0003DMT400078368 | Potato | nucleus | 36.8 | 25.53 |
| KRG90949 | Soybean | nucleus | 36.36 | 25.23 |
| VIT_01s0011g04510.t01 | Wine grape | endoplasmic reticulum, nucleus, vacuole | 35.93 | 21.12 |
Protein Annotations
| EnsemblPlants:CDY37340 | EnsemblPlantsGene:GSBRNA2T00063874001 | PANTHER:PTHR37715 | ProteinID:CDY37340 | ProteinID:CDY37340.1 | SEG:seg |
| UniParc:UPI0004EEDDE2 | UniProt:A0A078HG54 | MapMan:35.2 | : | : | : |
Description
BnaC02g33580DBnaC02g33580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG54]
Coordinates
chrLK032398:+:41732..43159
Molecular Weight (calculated)
27593.3 Da
IEP (calculated)
10.984
GRAVY (calculated)
-2.143
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCKKFMQMV EEKKRQILEK KEAPLKWEQK LEAAAKAAET KDKRSKKRRR QRAAFESSSE SDTSSDVSRK SRRTHSKHRR HAHSDSDDSD RRKDKRSRRH
101: KRRSSSSSDD SSDDYESGSE DEQRMKIRHH RRHKSHSSRQ TYDDDNAEDA RGRHAKHHRH VEVVPSSDSE EERGGRRKHR HNRGSAASSD SDSEVRRKNR
201: KRREHQRYRW AESSSEDDDG AMRRRRHHKH D
101: KRRSSSSSDD SSDDYESGSE DEQRMKIRHH RRHKSHSSRQ TYDDDNAEDA RGRHAKHHRH VEVVPSSDSE EERGGRRKHR HNRGSAASSD SDSEVRRKNR
201: KRREHQRYRW AESSSEDDDG AMRRRRHHKH D
001: MDCKKFIQMV EEKKRRVLEK QEAPLKWEQK LEAAANAKAD TETKVKRSKG PKRKQRAASE SSSESDSSSE VRRKSRRSHN KHRRHAHSDS DDSDRRKEKK
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
101: SRRQKRRSLS PSDDSTGDYE SGSEDELRMK IKHHRRHKWH SSRKTCDDDS TEDVRRKHLK HHRRSEVVTS SDSEEESGRR RRGKYHRHNR GSASSSGSEE
201: DSGKSMKRRQ HKRHRLAESS SEEDGAMRRT RHHKHGRDSA SESDGRR
Arabidopsis Description
AT2G01100 protein [Source:UniProtKB/TrEMBL;Acc:Q9SJV6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.