CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
cytosol 1
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi, peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017444.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	100.0	100.0
CDY17461	Canola	cytosol, mitochondrion, nucleus	92.54	92.54
CDY36234	Canola	mitochondrion	74.63	74.63
CDY17663	Canola	cytosol	78.36	73.43
CDX96277	Canola	mitochondrion	46.27	47.33
CDY11545	Canola	mitochondrion	46.27	47.33
CDY23481	Canola	mitochondrion	45.52	43.57
CDX68330	Canola	mitochondrion	45.52	42.96
CDY03721	Canola	mitochondrion	41.79	42.75
CDY21419	Canola	mitochondrion	43.28	42.03
CDY09482	Canola	mitochondrion	41.79	41.48
CDY71620	Canola	cytosol, mitochondrion	42.54	41.3
CDX91699	Canola	cytosol	44.03	40.14
CDY41461	Canola	cytosol	44.03	40.14
CDX74563	Canola	cytosol, nucleus, plastid	37.31	35.21
CDY01710	Canola	cytosol, nucleus, plastid	37.31	35.21

Protein Annotations

EnsemblPlants:CDY04091	EnsemblPlantsGene:GSBRNA2T00117720001	PANTHER:PTHR33270	PANTHER:PTHR33270:SF5	ProteinID:CDY04091	ProteinID:CDY04091.1
UniParc:UPI0002542344	MapMan:35.2	:	:	:	:

Description

BnaA09g18690D

Coordinates

chrLK031949:+:5298..6343

Molecular Weight (calculated)

14812.9 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.202

Length

134 amino acids

Sequence
(BLAST)

001: MVYNKQKKAH KSKINKFLVS ISFIGSAGPI RFVVKEDETV SHVIEYALKC YAREGRLPLL GSDSSYFLLY CPYCAAEAFN PCGKIGSIGS RNFVLSKKSD
101: AQSLGDSVGT TTRKISGRWK AWLNKSLGLM DPSH

Best Arabidopsis Sequence Match ( AT2G01554.1 )
(BLAST)

001: MLYNNKHQRN QKSKTTNRFL VSINVLGSAG FHFSDQIPAF SDFIALTVPL KGKIGSTGSR NFVLSNKLET QNLEDSMMTT TTTRKTSGRW KAWLNKSFGL
101: MVPSH

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 30201 Blast hits to 17322 /.../ins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G01554]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.