Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024876.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY36234 | Canola | mitochondrion | 82.52 | 88.06 |
| CDY04091 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 73.43 | 78.36 |
| CDY17461 | Canola | cytosol, mitochondrion, nucleus | 72.73 | 77.61 |
| CDX96277 | Canola | mitochondrion | 47.55 | 51.91 |
| CDY11545 | Canola | mitochondrion | 47.55 | 51.91 |
| CDY23481 | Canola | mitochondrion | 46.85 | 47.86 |
| CDY03721 | Canola | mitochondrion | 43.36 | 47.33 |
| CDX68330 | Canola | mitochondrion | 46.85 | 47.18 |
| CDY09482 | Canola | mitochondrion | 43.36 | 45.93 |
| CDX91699 | Canola | cytosol | 46.85 | 45.58 |
| CDY41461 | Canola | cytosol | 46.85 | 45.58 |
| CDY21419 | Canola | mitochondrion | 43.36 | 44.93 |
| CDY71620 | Canola | cytosol, mitochondrion | 42.66 | 44.2 |
| CDX74563 | Canola | cytosol, nucleus, plastid | 35.66 | 35.92 |
| CDY01710 | Canola | cytosol, nucleus, plastid | 35.66 | 35.92 |
Protein Annotations
| EnsemblPlants:CDY17663 | EnsemblPlantsGene:GSBRNA2T00001881001 | PANTHER:PTHR33270 | PANTHER:PTHR33270:SF5 | ProteinID:CDY17663 | ProteinID:CDY17663.1 |
| SEG:seg | UniParc:UPI000253F99F | UniProt:A0A078FZA6 | MapMan:35.2 | : | : |
Description
BnaA06g34820DBnaA06g34820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZA6]
Coordinates
chrLK032076:-:466192..466698
Molecular Weight (calculated)
15971.2 Da
IEP (calculated)
10.500
GRAVY (calculated)
-0.325
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLYNNNNNN KQKKTHKSKI NRFLVSISFL GSAGPIRFVV KEDETVSNVI DYALKCYARE GRLPLLGSDS SFFLLYSPYY AVEAFNPWGK IGSTGSRNFV
101: LSKKLEAQNL GGSVDTSTTT IRKTSGKWKA WLNKSLGLMV PSH
101: LSKKLEAQNL GGSVDTSTTT IRKTSGKWKA WLNKSLGLMV PSH
001: MLYNNKHQRN QKSKTTNRFL VSINVLGSAG FHFSDQIPAF SDFIALTVPL KGKIGSTGSR NFVLSNKLET QNLEDSMMTT TTTRKTSGRW KAWLNKSFGL
101: MVPSH
101: MVPSH
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 30201 Blast hits to 17322 /.../ins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G01554]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.