CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74563	Canola	cytosol, nucleus, plastid	95.77	95.77
AT5G37730.1	Thale cress	cytosol	65.49	51.1
CDX96277	Canola	mitochondrion	35.92	38.93
CDY11545	Canola	mitochondrion	35.92	38.93
CDY36234	Canola	mitochondrion	36.62	38.81
CDY03721	Canola	mitochondrion	34.51	37.4
CDY04091	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	35.21	37.31
CDY17461	Canola	cytosol, mitochondrion, nucleus	35.21	37.31
CDY09482	Canola	mitochondrion	35.21	37.04
CDY17663	Canola	cytosol	35.92	35.66
CDY71620	Canola	cytosol, mitochondrion	34.51	35.51
CDY21419	Canola	mitochondrion	34.51	35.51
CDY41461	Canola	cytosol	36.62	35.37
CDX68330	Canola	mitochondrion	35.21	35.21
CDX91699	Canola	cytosol	35.92	34.69
CDY23481	Canola	mitochondrion	33.8	34.29
HORVU5Hr1G018240.1	Barley	mitochondrion	33.1	30.52
TraesCS4A01G166700.1	Wheat	mitochondrion	32.39	30.46
TraesCS5A01G069000.1	Wheat	mitochondrion	32.39	29.3
Zm00001d048449_P001	Maize	mitochondrion	33.8	28.24
Os02t0324700-01	Rice	cytosol, mitochondrion	33.8	25.67
TraesCS5D01G081100.1	Wheat	mitochondrion	30.99	21.67

Protein Annotations

EnsemblPlants:CDY01710	EnsemblPlantsGene:GSBRNA2T00112803001	PANTHER:PTHR33270	PANTHER:PTHR33270:SF14	ProteinID:CDY01710	ProteinID:CDY01710.1
UniParc:UPI0004EDB6A8	MapMan:35.2	:	:	:	:

Description

BnaC04g30420D

Coordinates

chrLK031928:+:737613..738250

Molecular Weight (calculated)

16117.4 Da

IEP (calculated)

10.432

GRAVY (calculated)

-0.618

Length

142 amino acids

Sequence
(BLAST)

001: MKEPKKKFLV SVNVLGSVGP IRFLVNEDDN VSSVINTALK TYARQGRIPV LGLDVNNFIF YSNSAGFNTL NPQEKIGSMD ETNFLLCKRE REPLEKVEGR
101: EESKAREGKG WKNRLRRSLL GEFLYKNKSN STKVARTGSL YQ

Best Arabidopsis Sequence Match ( AT5G37730.1 )
(BLAST)

001: MNRNENVKGV MKRKNKKLLV SVNVLGSVGP IRFLANEDDE VSSAINTTLK AYARQGRIPV LGFDVDNFIF YSINAGFNTL HPQEKIGSMD VTNFLMCKKE
101: PRPLEKVEGI RESRARIGHG WKTTHLLRFL LGYIPYNHKP NSTSQMDYRS FGDGNAYCIE EYQQEFQRIT KIKEYQREFQ RF

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FHP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.