Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017444.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 92.54 | 92.54 |
| CDY04091 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 92.54 | 92.54 |
| CDY17663 | Canola | cytosol | 77.61 | 72.73 |
| CDY36234 | Canola | mitochondrion | 70.9 | 70.9 |
| CDX96277 | Canola | mitochondrion | 46.27 | 47.33 |
| CDY11545 | Canola | mitochondrion | 46.27 | 47.33 |
| CDY23481 | Canola | mitochondrion | 45.52 | 43.57 |
| CDX68330 | Canola | mitochondrion | 45.52 | 42.96 |
| CDY03721 | Canola | mitochondrion | 41.79 | 42.75 |
| CDY09482 | Canola | mitochondrion | 41.79 | 41.48 |
| CDX91699 | Canola | cytosol | 44.78 | 40.82 |
| CDY41461 | Canola | cytosol | 44.03 | 40.14 |
| CDY21419 | Canola | mitochondrion | 41.04 | 39.86 |
| CDY71620 | Canola | cytosol, mitochondrion | 40.3 | 39.13 |
| CDX74563 | Canola | cytosol, nucleus, plastid | 37.31 | 35.21 |
| CDY01710 | Canola | cytosol, nucleus, plastid | 37.31 | 35.21 |
Protein Annotations
| EnsemblPlants:CDY17461 | EnsemblPlantsGene:GSBRNA2T00095631001 | PANTHER:PTHR33270 | PANTHER:PTHR33270:SF5 | ProteinID:CDY17461 | ProteinID:CDY17461.1 |
| UniParc:UPI0004EF109E | UniProt:A0A078FWV4 | MapMan:35.2 | : | : | : |
Description
BnaC09g20760DBnaC09g20760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWV4]
Coordinates
chrLK032073:-:708568..709054
Molecular Weight (calculated)
14757.8 Da
IEP (calculated)
9.943
GRAVY (calculated)
-0.190
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYNKQKKTH KSKINKFLVS ISFIGSAGPI RFVVKEDETV SHVIEYALKC YAGEGRLPLL GSDSSYFLLY CPYCAAEAFN PCGKIGSIGS RNFVLSKKSD
101: AQTLGDSVGT TTRKISGRWK AWLNKSLGLM DPSH
101: AQTLGDSVGT TTRKISGRWK AWLNKSLGLM DPSH
001: MLYNNKHQRN QKSKTTNRFL VSINVLGSAG FHFSDQIPAF SDFIALTVPL KGKIGSTGSR NFVLSNKLET QNLEDSMMTT TTTRKTSGRW KAWLNKSFGL
101: MVPSH
101: MVPSH
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 30201 Blast hits to 17322 /.../ins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G01554]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.