Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49873 | Canola | nucleus | 62.7 | 24.16 |
| CDY64783 | Canola | cytosol, mitochondrion, nucleus | 44.84 | 22.47 |
| CDY47855 | Canola | cytosol, mitochondrion, nucleus | 44.05 | 22.07 |
| CDY68594 | Canola | nucleus | 48.02 | 15.92 |
| CDX67507 | Canola | nucleus | 50.0 | 9.66 |
| CDX67506 | Canola | cytosol | 17.06 | 8.38 |
| CDY71570 | Canola | endoplasmic reticulum | 15.87 | 7.55 |
| CDY44989 | Canola | nucleus | 13.1 | 7.08 |
| KRH60017 | Soybean | cytosol | 32.14 | 6.71 |
| CDY49872 | Canola | cytosol | 9.92 | 6.7 |
| CDY27679 | Canola | cytosol | 11.9 | 6.68 |
| KRH41293 | Soybean | cytosol | 32.54 | 5.81 |
| VIT_02s0025g01170.t01 | Wine grape | nucleus | 27.78 | 4.78 |
| CDX82737 | Canola | nucleus | 3.97 | 4.67 |
| CDY64785 | Canola | cytosol | 9.13 | 4.63 |
| CDX77396 | Canola | nucleus | 5.95 | 4.32 |
| CDX67508 | Canola | cytosol | 3.57 | 4.21 |
Protein Annotations
| EnsemblPlants:CDY27680 | EnsemblPlantsGene:GSBRNA2T00038457001 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011684 | InterPro:NAB | ncoils:Coil | PANTHER:PTHR32258 | PANTHER:PTHR32258:SF2 | PFAM:PF07765 |
| PFscan:PS51774 | ProteinID:CDY27680 | ProteinID:CDY27680.1 | SEG:seg | UniParc:UPI0004EF1987 | UniProt:A0A078GMA1 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaUnng00300DBnaUnng00300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMA1]
Coordinates
chrLK032208:-:310116..313929
Molecular Weight (calculated)
28798.7 Da
IEP (calculated)
5.574
GRAVY (calculated)
-1.117
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKHRFRETL KSFFEPHFDH EKGEMLKGTK SEMDKKVKKI LGMVESGDMD EDKSKRQVVS ELVNEFYNAY QTLYRKYDDL TGEIKKKVHG KGESSSSSSS
101: DSDSDDSSKK TKRNGKVGKD VESVTDGQTE AANLEIADLK KKLATSVEEK AAVDSELEAA LVKLKESEEI IRNLKLETEK LEGEKTTAMS DNRELHQKLE
201: AAGKTETDLS QTLEDVKKER DQLQTEIDNG IKRFQEAEKK LWWNQQSNEL KI
101: DSDSDDSSKK TKRNGKVGKD VESVTDGQTE AANLEIADLK KKLATSVEEK AAVDSELEAA LVKLKESEEI IRNLKLETEK LEGEKTTAMS DNRELHQKLE
201: AAGKTETDLS QTLEDVKKER DQLQTEIDNG IKRFQEAEKK LWWNQQSNEL KI
0001: MKKHKFRETL KSFFEPHFDH EKGEMLKGTK TEIDEKVNKI LGMVESGDVN EDESNRQVVA DLVKEFYSEY QSLYRQYDDL TGEIRKKVNG KGESSSSSSS
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
Arabidopsis Description
CIP1COP1-interactive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JZY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.