Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G64330.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G64330.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47855 | Canola | cytosol, mitochondrion, nucleus | 96.62 | 96.62 |
| AT1G64330.1 | Thale cress | cytosol, mitochondrion, nucleus | 78.93 | 71.53 |
| CDX67508 | Canola | cytosol | 25.45 | 59.81 |
| CDX82737 | Canola | nucleus | 24.45 | 57.48 |
| CDY27680 | Canola | nucleus | 22.47 | 44.84 |
| CDY27679 | Canola | cytosol | 29.42 | 32.96 |
| CDY49872 | Canola | cytosol | 20.08 | 27.08 |
| CDX77396 | Canola | nucleus | 17.89 | 25.94 |
| CDY49873 | Canola | nucleus | 30.42 | 23.39 |
| CDY44989 | Canola | nucleus | 21.07 | 22.75 |
| CDY68594 | Canola | nucleus | 25.45 | 16.84 |
| CDX67506 | Canola | cytosol | 17.1 | 16.76 |
| CDY64785 | Canola | cytosol | 15.9 | 16.1 |
| CDY71570 | Canola | endoplasmic reticulum | 16.5 | 15.66 |
| KRH60017 | Soybean | cytosol | 35.39 | 14.75 |
| KRH41293 | Soybean | cytosol | 35.19 | 12.54 |
| VIT_02s0025g01170.t01 | Wine grape | nucleus | 33.6 | 11.54 |
| CDX67507 | Canola | nucleus | 28.63 | 11.03 |
Protein Annotations
| EnsemblPlants:CDY64783 | EnsemblPlantsGene:GSBRNA2T00042725001 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011684 | InterPro:NAB | ncoils:Coil | PANTHER:PTHR32258 | PANTHER:PTHR32258:SF2 | PFAM:PF07765 |
| PFscan:PS51774 | ProteinID:CDY64783 | ProteinID:CDY64783.1 | SEG:seg | UniParc:UPI0004EE2397 | UniProt:A0A078JB68 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng44890DBnaCnng44890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB68]
Coordinates
chrLK034550:-:2593..6113
Molecular Weight (calculated)
58728.1 Da
IEP (calculated)
4.794
GRAVY (calculated)
-1.139
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKHSIRESL KSFFEPHLHP DNAELLKGTK TEIDEKVKRI LGIVESGDIE EDESKREVVA ELVKEFYRDY ESLYNQYGDL TGEIRNRVHG KGENESSSSS
101: SDSDSDSDKK SKRNGRADND MKQMEAANLE IADLKRKLET TLEEKEAEHQ ETLKKLKESE DIIGDLRLET DKLATENKEL NQKLEATGEA ESDLNQKLER
201: EKQEKAALLN QLNDVQNALL EQEAAYNTLS QEHKQVNGLF QEREATIKKL TDDYKQAREM LEEYMSKLEE TERRMQETGK DVTSREAEIE ELQETVERLR
301: NQVEMKGEEV ENLMEKMNNI EVKLRLSNQK LRVTEQVLRE REEELKSVEA KHLEKQALLQ EKIAMTHETY GGLVKEMSER LNYRFQALSE KVEEKHGSFE
401: ETVVEAIKMV LKAKECVGEM KKEKEEMEKG KEEMEKKLEG QAREGEREKE ELKESLLGLG EEKREAIRQL CVWTEHHRDR CEYLEEVLSK MVVARGQRRS
501: QRA
101: SDSDSDSDKK SKRNGRADND MKQMEAANLE IADLKRKLET TLEEKEAEHQ ETLKKLKESE DIIGDLRLET DKLATENKEL NQKLEATGEA ESDLNQKLER
201: EKQEKAALLN QLNDVQNALL EQEAAYNTLS QEHKQVNGLF QEREATIKKL TDDYKQAREM LEEYMSKLEE TERRMQETGK DVTSREAEIE ELQETVERLR
301: NQVEMKGEEV ENLMEKMNNI EVKLRLSNQK LRVTEQVLRE REEELKSVEA KHLEKQALLQ EKIAMTHETY GGLVKEMSER LNYRFQALSE KVEEKHGSFE
401: ETVVEAIKMV LKAKECVGEM KKEKEEMEKG KEEMEKKLEG QAREGEREKE ELKESLLGLG EEKREAIRQL CVWTEHHRDR CEYLEEVLSK MVVARGQRRS
501: QRA
001: MRKLSIRDSL KSFFEPHLHP DNGESLKGTK TEIDEKVKKI LGIVESGDIE EDESKRLVVA ELVKDFYKEY ESLYHQYDDL TGEIRKKVHG KGENDSSSSS
101: SSDSDSDKKS KRNGRGENEI ELLKKQMEDA NLEIADLKMK LATTDEHKEA VESEHQEILK KLKESDEICG NLRVETEKLT SENKELNEKL EVAGETESDL
201: NQKLEDVKKE RDGLEAELAS KAKDHESTLE EVNRLQGQKN ETEAELEREK QEKPALLNQI NDVQKALLEQ EAAYNTLSQE HKQINGLFEE REATIKKLTD
301: DYKQAREMLE EYMSKMEETE RRMQETGKDV ASRESAIVDL EETVESLRNE VERKGDEIES LMEKMSNIEV KLRLSNQKLR VTEQVLTEKE GELKRIEAKH
401: LEEQALLEEK IATTHETYRG LIKEISERVD STILNRFQSL SEKLEEKHKS YEKTVVEATK MLLTAKKCVV EMKKEKDEMA KEKEEVEKKL EGQVREEEKE
501: KEKLKETLLG LGEEKREAIR QLCIWIEHHR DRCEYLEEVL SKMVVARGQR RSQRA
101: SSDSDSDKKS KRNGRGENEI ELLKKQMEDA NLEIADLKMK LATTDEHKEA VESEHQEILK KLKESDEICG NLRVETEKLT SENKELNEKL EVAGETESDL
201: NQKLEDVKKE RDGLEAELAS KAKDHESTLE EVNRLQGQKN ETEAELEREK QEKPALLNQI NDVQKALLEQ EAAYNTLSQE HKQINGLFEE REATIKKLTD
301: DYKQAREMLE EYMSKMEETE RRMQETGKDV ASRESAIVDL EETVESLRNE VERKGDEIES LMEKMSNIEV KLRLSNQKLR VTEQVLTEKE GELKRIEAKH
401: LEEQALLEEK IATTHETYRG LIKEISERVD STILNRFQSL SEKLEEKHKS YEKTVVEATK MLLTAKKCVV EMKKEKDEMA KEKEEVEKKL EGQVREEEKE
501: KEKLKETLLG LGEEKREAIR QLCIWIEHHR DRCEYLEEVL SKMVVARGQR RSQRA
Arabidopsis Description
At1g64330 [Source:UniProtKB/TrEMBL;Acc:Q9C7V7]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.