Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G64330.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G64330.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027741.1-P | Field mustard | cytosol, mitochondrion, nucleus | 99.2 | 99.2 |
| CDY64783 | Canola | cytosol, mitochondrion, nucleus | 96.62 | 96.62 |
| AT1G64330.1 | Thale cress | cytosol, mitochondrion, nucleus | 78.13 | 70.81 |
| CDX67508 | Canola | cytosol | 25.45 | 59.81 |
| CDX82737 | Canola | nucleus | 24.25 | 57.01 |
| CDY27680 | Canola | nucleus | 22.07 | 44.05 |
| CDY27679 | Canola | cytosol | 28.83 | 32.29 |
| CDY49872 | Canola | cytosol | 20.08 | 27.08 |
| CDX77396 | Canola | nucleus | 18.09 | 26.22 |
| CDY44989 | Canola | nucleus | 21.27 | 22.96 |
| CDY49873 | Canola | nucleus | 29.82 | 22.94 |
| CDX67506 | Canola | cytosol | 17.5 | 17.15 |
| CDY68594 | Canola | nucleus | 24.85 | 16.45 |
| CDY64785 | Canola | cytosol | 15.9 | 16.1 |
| CDY71570 | Canola | endoplasmic reticulum | 16.9 | 16.04 |
| KRH60017 | Soybean | cytosol | 35.39 | 14.75 |
| KRH41293 | Soybean | cytosol | 34.99 | 12.47 |
| VIT_02s0025g01170.t01 | Wine grape | nucleus | 33.8 | 11.61 |
| CDX67507 | Canola | nucleus | 28.23 | 10.88 |
Protein Annotations
| EnsemblPlants:CDY47855 | EnsemblPlantsGene:GSBRNA2T00088329001 | GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011684 | InterPro:NAB | ncoils:Coil | PANTHER:PTHR32258 | PANTHER:PTHR32258:SF2 | PFAM:PF07765 |
| PFscan:PS51774 | ProteinID:CDY47855 | ProteinID:CDY47855.1 | SEG:seg | UniParc:UPI0004EE3BEA | UniProt:A0A078IAD9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA09g12340DBnaA09g12340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAD9]
Coordinates
chrLK032740:-:145014..148585
Molecular Weight (calculated)
58624.2 Da
IEP (calculated)
4.790
GRAVY (calculated)
-1.092
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKHSIRESL KSFFEPHLHP DNAELLKGTK TEIDEKVKRI LGIIESGDIE ADESKREVVA EVVKEFYRDY ESLYNQYGDL TGEIRNKVHG KGENESSSSS
101: SDSDSDSDKK SKRNGRADND MKQIEAANLE IADLKRKLET TLEEKEAEHQ ETLKKLKESE DIIGDLRLET DKLATENKEL NQKLEAAGEA ESDLNQKLER
201: EKQEKAALLN QLNDVQNALL EQEAAYNTLS QEHKQVNGLF QEREATIKKL TEDYKQAREM LEEYMSKLEE TERRMQETGK DVASREAEIE ELQETVERLR
301: NQVEMKGEEV ENLMEKMNNI EVKLRLSNQK LRVTEQVLRE REEELKSVEA KHLEKQALLQ EKIVMTHETY GGLIKEMSER LNYRFQDLSE KVEVRLGGFE
401: ETVVEATKMV LKAKECVGEM KKEKEEMEKG KEEMEKKLEG QVREGEREKE ELKESLLGLG EEKREAIRQL CVWTEHHRDR CEYLEEVLSK MVVARGQRRS
501: QRA
101: SDSDSDSDKK SKRNGRADND MKQIEAANLE IADLKRKLET TLEEKEAEHQ ETLKKLKESE DIIGDLRLET DKLATENKEL NQKLEAAGEA ESDLNQKLER
201: EKQEKAALLN QLNDVQNALL EQEAAYNTLS QEHKQVNGLF QEREATIKKL TEDYKQAREM LEEYMSKLEE TERRMQETGK DVASREAEIE ELQETVERLR
301: NQVEMKGEEV ENLMEKMNNI EVKLRLSNQK LRVTEQVLRE REEELKSVEA KHLEKQALLQ EKIVMTHETY GGLIKEMSER LNYRFQDLSE KVEVRLGGFE
401: ETVVEATKMV LKAKECVGEM KKEKEEMEKG KEEMEKKLEG QVREGEREKE ELKESLLGLG EEKREAIRQL CVWTEHHRDR CEYLEEVLSK MVVARGQRRS
501: QRA
001: MRKLSIRDSL KSFFEPHLHP DNGESLKGTK TEIDEKVKKI LGIVESGDIE EDESKRLVVA ELVKDFYKEY ESLYHQYDDL TGEIRKKVHG KGENDSSSSS
101: SSDSDSDKKS KRNGRGENEI ELLKKQMEDA NLEIADLKMK LATTDEHKEA VESEHQEILK KLKESDEICG NLRVETEKLT SENKELNEKL EVAGETESDL
201: NQKLEDVKKE RDGLEAELAS KAKDHESTLE EVNRLQGQKN ETEAELEREK QEKPALLNQI NDVQKALLEQ EAAYNTLSQE HKQINGLFEE REATIKKLTD
301: DYKQAREMLE EYMSKMEETE RRMQETGKDV ASRESAIVDL EETVESLRNE VERKGDEIES LMEKMSNIEV KLRLSNQKLR VTEQVLTEKE GELKRIEAKH
401: LEEQALLEEK IATTHETYRG LIKEISERVD STILNRFQSL SEKLEEKHKS YEKTVVEATK MLLTAKKCVV EMKKEKDEMA KEKEEVEKKL EGQVREEEKE
501: KEKLKETLLG LGEEKREAIR QLCIWIEHHR DRCEYLEEVL SKMVVARGQR RSQRA
101: SSDSDSDKKS KRNGRGENEI ELLKKQMEDA NLEIADLKMK LATTDEHKEA VESEHQEILK KLKESDEICG NLRVETEKLT SENKELNEKL EVAGETESDL
201: NQKLEDVKKE RDGLEAELAS KAKDHESTLE EVNRLQGQKN ETEAELEREK QEKPALLNQI NDVQKALLEQ EAAYNTLSQE HKQINGLFEE REATIKKLTD
301: DYKQAREMLE EYMSKMEETE RRMQETGKDV ASRESAIVDL EETVESLRNE VERKGDEIES LMEKMSNIEV KLRLSNQKLR VTEQVLTEKE GELKRIEAKH
401: LEEQALLEEK IATTHETYRG LIKEISERVD STILNRFQSL SEKLEEKHKS YEKTVVEATK MLLTAKKCVV EMKKEKDEMA KEKEEVEKKL EGQVREEEKE
501: KEKLKETLLG LGEEKREAIR QLCIWIEHHR DRCEYLEEVL SKMVVARGQR RSQRA
Arabidopsis Description
At1g64330 [Source:UniProtKB/TrEMBL;Acc:Q9C7V7]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.