Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G64330.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67508 | Canola | cytosol | 6.69 | 45.79 |
| CDX82737 | Canola | nucleus | 6.63 | 45.33 |
| KRH60017 | Soybean | cytosol | 35.18 | 42.67 |
| KRH41293 | Soybean | cytosol | 38.25 | 39.69 |
| CDX77396 | Canola | nucleus | 8.67 | 36.6 |
| CDY27679 | Canola | cytosol | 11.07 | 36.08 |
| CDY49872 | Canola | cytosol | 9.15 | 35.92 |
| Bra027741.1-P | Field mustard | cytosol, mitochondrion, nucleus | 11.68 | 34.0 |
| AT1G64330.1 | Thale cress | cytosol, mitochondrion, nucleus | 12.84 | 33.87 |
| CDY47855 | Canola | cytosol, mitochondrion, nucleus | 11.61 | 33.8 |
| CDY64783 | Canola | cytosol, mitochondrion, nucleus | 11.54 | 33.6 |
| CDY44989 | Canola | nucleus | 10.31 | 32.4 |
| CDY27680 | Canola | nucleus | 4.78 | 27.78 |
| Bra025461.1-P | Field mustard | nucleus | 23.43 | 27.22 |
| Bra028506.1-P | Field mustard | nucleus | 24.39 | 22.4 |
| CDY68594 | Canola | nucleus | 11.34 | 21.84 |
| AT5G41790.2 | Thale cress | nucleus | 23.43 | 21.63 |
| CDY49873 | Canola | nucleus | 9.08 | 20.34 |
| CDX67507 | Canola | nucleus | 16.26 | 18.24 |
Protein Annotations
| MapMan:35.1 | ProteinID:CCB58238 | ProteinID:CCB58238.1 | ncoils:Coil | UniProt:F6HUS2 | EMBL:FN596251 |
| GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011684 | InterPro:NAB |
| PFAM:PF07765 | PFscan:PS51774 | PANTHER:PTHR13140 | PANTHER:PTHR13140:SF664 | TIGR:TC53357 | TIGR:TC57949 |
| UniParc:UPI0002108EA3 | ArrayExpress:VIT_02s0025g01170 | EnsemblPlantsGene:VIT_02s0025g01170 | EnsemblPlants:VIT_02s0025g01170.t01 | SEG:seg | : |
Description
No Description!
Coordinates
chr2:+:1128686..1137348
Molecular Weight (calculated)
169373.0 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.948
Length
1464 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRKHQWRESI KSFFGNHIDP VKDEQLKGNK TEIDDKVKTL LELIKEEGLD EKDGNGDGNL KRQPLIELIE DFHRNYQSLY DRYDNLTEIL RKKIHGKPEK
0101: DTSSTTSSDS DSDHSTKERS DKNGKAFSKN PETEEIIMHW KSEVERLDGE KTELLVENGN LKQKLDNASN VEAELNQRLE DLNRERENLI MEKETAIKRI
0201: EVGEEIAEEL KSTGDKLKDE KLVLEQELEA VKGEISNLEQ LLESTRQEMS SLSHTHRAIE EEKDSLALKI LEISNEFKQA ENAMQELMAE SSQLKVKLGD
0301: KESELSNLMK KHEGHENEAS ARIKGLEAQV TGLELELSSL STQRGEMEKL IESTATEAKQ LAEENLGLKA QISQLETISK EREEELAGLL KKFKDDENES
0401: LSKIADLTAQ INNLQLEVDS LQAQKDELEK QVVQNSEEAS VQVKGLTEQV TELKLELESL HSLKMEMELM LEKKTEENSE YLIQMGNLKE ELVSKAADQQ
0501: RILEEKESLT GKVKDLELEM DSIRNHRSTL EEQLSSKHHE YNQLREEKEG LHVRSFDLEK TITERGDELS ALQKKFEDTE NEASARIVAL TAEVNSLQVE
0601: MDSLHAQKGE LEEQLRRNGD EASDQIKDLM GQLNETKQEL ESLHSQKTEM ELLLKKRTLE NSEFLIQIGN LKEELANKAV DQQRTMEEKE CLVSKVKDLE
0701: LEMDSIRNHK SELDEQLRSK HHEYNQLREE KEGLHVRSFD LEKTITERGD ELSALQKKFE DTENEASARI VALTAEVNSL RVEMDSLQAQ KGELEEQLRR
0801: RGDEASDQIK DLMGQVSETK QELESLHSQK TEKELLLEKR TQENSGFLIQ IGNLKEELAN KTVDQQRMLE EKESLVAKVK DLELEMDSIQ NHKSELEEQL
0901: SSKHHEYNKL SEEKEGLHVR SFDLEKTLTD RGNELSALQK KLEDGASEAT AQILALTTQV NNLQQDMETL IAQKSELEDQ IVSKSNEASA EIKGLMDRIT
1001: EMQQELDSLS SQKTEMESQL EGKVQENSEY FSQIGSLKDE LVSKAADQQR MLEEIESLTA RLKHLEMEIE LIRKHECELE EHIRAKDLEF NQLREEKEGL
1101: HVRSFDLEKT ITDRGDELSA LQQELHSLQN EKSQLELEIQ RHKEESSESL TELENQRMEL TSKVEEHQRM LREQEDAFNK LMEEYKQSEG LFHEFKNNLQ
1201: VTERRLEEME EESRIHLESK AHIIADFETM VEDLKRDLEV KGDELSTLVE EVRNIEVKLR LSNQKLRVTE QLLSEKEESY RRAEERFQQE NRALEGKVAV
1301: LSEVITSNNE SHVRMITDIS ETVNNTLAGL ESTVGKFEED SINFKNRISE IAGEVQVARN WVKMAKSEKE QLKSEASNLV EQLKYKKRKE EGEKESLIKA
1401: VSQLEKKVGE LEKMMNLKDE GILDLGEQKR EAIRQLCIWI DYHRERCDYL REMLAKMNIR SQRT
0101: DTSSTTSSDS DSDHSTKERS DKNGKAFSKN PETEEIIMHW KSEVERLDGE KTELLVENGN LKQKLDNASN VEAELNQRLE DLNRERENLI MEKETAIKRI
0201: EVGEEIAEEL KSTGDKLKDE KLVLEQELEA VKGEISNLEQ LLESTRQEMS SLSHTHRAIE EEKDSLALKI LEISNEFKQA ENAMQELMAE SSQLKVKLGD
0301: KESELSNLMK KHEGHENEAS ARIKGLEAQV TGLELELSSL STQRGEMEKL IESTATEAKQ LAEENLGLKA QISQLETISK EREEELAGLL KKFKDDENES
0401: LSKIADLTAQ INNLQLEVDS LQAQKDELEK QVVQNSEEAS VQVKGLTEQV TELKLELESL HSLKMEMELM LEKKTEENSE YLIQMGNLKE ELVSKAADQQ
0501: RILEEKESLT GKVKDLELEM DSIRNHRSTL EEQLSSKHHE YNQLREEKEG LHVRSFDLEK TITERGDELS ALQKKFEDTE NEASARIVAL TAEVNSLQVE
0601: MDSLHAQKGE LEEQLRRNGD EASDQIKDLM GQLNETKQEL ESLHSQKTEM ELLLKKRTLE NSEFLIQIGN LKEELANKAV DQQRTMEEKE CLVSKVKDLE
0701: LEMDSIRNHK SELDEQLRSK HHEYNQLREE KEGLHVRSFD LEKTITERGD ELSALQKKFE DTENEASARI VALTAEVNSL RVEMDSLQAQ KGELEEQLRR
0801: RGDEASDQIK DLMGQVSETK QELESLHSQK TEKELLLEKR TQENSGFLIQ IGNLKEELAN KTVDQQRMLE EKESLVAKVK DLELEMDSIQ NHKSELEEQL
0901: SSKHHEYNKL SEEKEGLHVR SFDLEKTLTD RGNELSALQK KLEDGASEAT AQILALTTQV NNLQQDMETL IAQKSELEDQ IVSKSNEASA EIKGLMDRIT
1001: EMQQELDSLS SQKTEMESQL EGKVQENSEY FSQIGSLKDE LVSKAADQQR MLEEIESLTA RLKHLEMEIE LIRKHECELE EHIRAKDLEF NQLREEKEGL
1101: HVRSFDLEKT ITDRGDELSA LQQELHSLQN EKSQLELEIQ RHKEESSESL TELENQRMEL TSKVEEHQRM LREQEDAFNK LMEEYKQSEG LFHEFKNNLQ
1201: VTERRLEEME EESRIHLESK AHIIADFETM VEDLKRDLEV KGDELSTLVE EVRNIEVKLR LSNQKLRVTE QLLSEKEESY RRAEERFQQE NRALEGKVAV
1301: LSEVITSNNE SHVRMITDIS ETVNNTLAGL ESTVGKFEED SINFKNRISE IAGEVQVARN WVKMAKSEKE QLKSEASNLV EQLKYKKRKE EGEKESLIKA
1401: VSQLEKKVGE LEKMMNLKDE GILDLGEQKR EAIRQLCIWI DYHRERCDYL REMLAKMNIR SQRT
0001: MKKHKFRETL KSFFEPHFDH EKGEMLKGTK TEIDEKVNKI LGMVESGDVN EDESNRQVVA DLVKEFYSEY QSLYRQYDDL TGEIRKKVNG KGESSSSSSS
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
0101: DSDSDHSSKR KVKRNGNGKV EKDVELVTGA LKQQIEAANL EIADLKGKLT TTVEEKEAVD SELELALMKL KESEEISSKL KLETEKLEDE KSIALSDNRE
0201: LHQKLEVAGK TETDLNQKLE DIKKERDELQ TERDNGIKRF QEAEKVAEDW KTTSDQLKDE TSNLKQQLEA SEQRVSELTS GMNSAEEENK SLSLKVSEIS
0301: DVIQQGQTTI QELISELGEM KEKYKEKESE HSSLVELHKT HERESSSQVK ELEAHIESSE KLVADFTQSL NNAEEEKKLL SQKIAELSNE IQEAQNTMQE
0401: LMSESGQLKE SHSVKERELF SLRDIHEIHQ RDSSTRASEL EAQLESSKQQ VSDLSASLKA AEEENKAISS KNVETMNKLE QTQNTIQELM AELGKLKDSH
0501: REKESELSSL VEVHETHQRD SSIHVKELEE QVESSKKLVA ELNQTLNNAE EEKKVLSQKI AELSNEIKEA QNTIQELVSE SGQLKESHSV KDRDLFSLRD
0601: IHETHQRESS TRVSELEAQL ESSEQRISDL TVDLKDAEEE NKAISSKNLE IMDKLEQAQN TIKELMDELG ELKDRHKEKE SELSSLVKSA DQQVADMKQS
0701: LDNAEEEKKM LSQRILDISN EIQEAQKTIQ EHMSESEQLK ESHGVKEREL TGLRDIHETH QRESSTRLSE LETQLKLLEQ RVVDLSASLN AAEEEKKSLS
0801: SMILEITDEL KQAQSKVQEL VTELAESKDT LTQKENELSS FVEVHEAHKR DSSSQVKELE ARVESAEEQV KELNQNLNSS EEEKKILSQQ ISEMSIKIKR
0901: AESTIQELSS ESERLKGSHA EKDNELFSLR DIHETHQREL STQLRGLEAQ LESSEHRVLE LSESLKAAEE ESRTMSTKIS ETSDELERTQ IMVQELTADS
1001: SKLKEQLAEK ESKLFLLTEK DSKSQVQIKE LEATVATLEL ELESVRARII DLETEIASKT TVVEQLEAQN REMVARISEL EKTMEERGTE LSALTQKLED
1101: NDKQSSSSIE TLTAEIDGLR AELDSMSVQK EEVEKQMVCK SEEASVKIKR LDDEVNGLRQ QVASLDSQRA ELEIQLEKKS EEISEYLSQI TNLKEEIINK
1201: VKVHESILEE INGLSEKIKG RELELETLGK QRSELDEELR TKKEENVQMH DKINVASSEI MALTELINNL KNELDSLQVQ KSETEAELER EKQEKSELSN
1301: QITDVQKALV EQEAAYNTLE EEHKQINELF KETEATLNKV TVDYKEAQRL LEERGKEVTS RDSTIGVHEE TMESLRNELE MKGDEIETLM EKISNIEVKL
1401: RLSNQKLRVT EQVLTEKEEA FRKEEAKHLE EQALLEKNLT MTHETYRGMI KEIADKVNIT VDGFQSMSEK LTEKQGRYEK TVMEASKILW TATNWVIERN
1501: HEKEKMNKEI EKKDEEIKKL GGKVREDEKE KEMMKETLMG LGEEKREAIR QLCVWIDHHR SRCEYLEEVL SKTVVARGQR RVSQRT
Arabidopsis Description
CIP1COP1-interactive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:F4JZY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.