CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029702_P001	Maize	cytosol, mitochondrion, plastid	40.93	75.78
EER94613	Sorghum	cytosol	66.67	67.52
EER94614	Sorghum	cytosol	68.78	66.8
EER94618	Sorghum	cytosol	59.92	65.14
EER94605	Sorghum	cytosol	62.45	62.71
EER94619	Sorghum	cytosol	62.87	62.6
EER94615	Sorghum	cytosol	62.87	62.34
OQU92262	Sorghum	cytosol	63.71	62.14
EER92032	Sorghum	cytosol	60.76	61.02
EER94606	Sorghum	cytosol	59.07	59.32
OQU92261	Sorghum	cytosol	68.78	57.6
KXG39035	Sorghum	cytosol	58.23	57.5
EER94604	Sorghum	cytosol	56.96	56.49
EER94597	Sorghum	cytosol	53.59	55.46
EES08965	Sorghum	endoplasmic reticulum	54.01	54.94
EER94598	Sorghum	cytosol	50.63	52.63
EER92030	Sorghum	cytosol	51.9	51.68
EES00904	Sorghum	mitochondrion	52.32	51.45
EES03470	Sorghum	cytosol	51.05	50.63
EES03469	Sorghum	cytosol	50.63	50.42
EER94596	Sorghum	cytosol	48.52	49.57
EES03468	Sorghum	cytosol	51.48	49.0
EER94599	Sorghum	cytosol	47.68	48.09
EES13278	Sorghum	cytosol	51.05	47.45
OQU86987	Sorghum	cytosol	50.21	46.48
EER92034	Sorghum	endoplasmic reticulum	44.73	45.69
EER92036	Sorghum	cytosol	43.88	44.26
EES00905	Sorghum	cytosol	43.46	43.46
EER92035	Sorghum	cytosol	43.88	43.15
EER97476	Sorghum	cytosol	37.97	39.47
EER90776	Sorghum	cytosol	37.13	38.94
EER93341	Sorghum	cytosol	35.44	38.36
EER91171	Sorghum	cytosol	37.97	38.3
EER90777	Sorghum	cytosol	35.02	36.24
EER89978	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.76	35.09
EER95876	Sorghum	cytosol	32.49	34.68
OQU89319	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.65	33.94

Protein Annotations

Gene3D:1.20.1050.10	MapMan:18.8.1.4	Gene3D:3.40.30.10	EntrezGene:8063162	UniProt:C5WUI5	ncoils:Coil
EnsemblPlants:EER94607	ProteinID:EER94607	ProteinID:EER94607.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009407	GO:GO:0009987
GO:GO:0016740	GO:GO:0019748	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	PFAM:PF13410	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR11260
PANTHER:PTHR11260:SF476	EnsemblPlantsGene:SORBI_3001G318300	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A830AD
RefSeq:XP_002467609.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:60655125..60656158

Molecular Weight (calculated)

26278.6 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.044

Length

237 amino acids

Sequence
(BLAST)

001: MAGGGDELKL LGSWASPFVI RVKLALSFKG LSCYENIEEE DLYYNKSELL LKSNPVHKQV PVLIHNGKSI CESQLVVQYI DETFTTSDPS LLAVEPYERA
101: MARFWGAYID DKLFASAFQV RRAKTEEEKA EALKQTIAAV ETLEAAFKEI SKGKPFFGGD SVGYLDIVLG GFIPMVYYGE ARYGIKLFDD TRSPLLVAWV
201: ERFGALDAAK AILPDVDKLV EYSEMKQARA AAMAAGH

Best Arabidopsis Sequence Match ( AT1G10360.1 )
(BLAST)

001: MATEDVKLIG SWASVYVMRA RIALHLKSIS YEFLQETYGS KSELLLKSNP VHKKMPVLIH ADKPVCESNI IVHYIDEAWN SSGPSILPSH PYDRAIARFW
101: AAYIDDQWFI SVRSILTAQG DEEKKAAIAQ VEERTKLLEK AFNDCSQGKP FFNGDHIGYL DIALGSFLGW WRVVELDANH KFLDETKTPS LVKWAERFCD
201: DPAVKPIMPE ITKLAEFARK LFPKRQA

Arabidopsis Description

GSTU18Glutathione S-transferase U18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FUS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.