CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026132_P001	Maize	vacuole	83.05	83.48
TraesCS2B01G423900.1	Wheat	extracellular	73.53	76.3
Os04t0561900-01	Rice	vacuole	72.84	75.99
TraesCS2D01G403100.1	Wheat	extracellular	72.49	75.09
EER97278	Sorghum	extracellular, golgi	60.73	64.05
TraesCS2A01G406200.3	Wheat	plasma membrane	66.44	63.47
HORVU2Hr1G096250.3	Barley	extracellular	34.08	63.14
EER90222	Sorghum	extracellular	57.09	60.44
OQU88350	Sorghum	extracellular	51.9	54.25
EES19711	Sorghum	extracellular	49.65	51.34
EES01652	Sorghum	extracellular, golgi, vacuole	48.1	49.82
KXG24449	Sorghum	cytosol, nucleus, vacuole	39.97	45.74
EER93966	Sorghum	extracellular	46.37	44.74
EER92264	Sorghum	extracellular	45.16	44.24
EER89036	Sorghum	plasma membrane	44.81	43.9

Protein Annotations

Gene3D:2.60.40.420	MapMan:50.1.10	EntrezGene:8057571	UniProt:C5YDY7	InterPro:Cu-oxidase	InterPro:Cu-oxidase_2
InterPro:Cu-oxidase_3	InterPro:CuRO_1_AAO-like	InterPro:Cupredoxin	EnsemblPlants:EES12655	ProteinID:EES12655	ProteinID:EES12655.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005618
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0009506	GO:GO:0016491
GO:GO:0016722	GO:GO:0030312	GO:GO:0055114	InterPro:IPR008972	PFAM:PF00394	PFAM:PF07731
PFAM:PF07732	PANTHER:PTHR11709	PANTHER:PTHR11709:SF64	EnsemblPlantsGene:SORBI_3006G178400	SUPFAM:SSF49503	unigene:Sbi.17644
SignalP:SignalP-noTM	UniParc:UPI0001A8765E	RefSeq:XP_002448327.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:53275913..53280375

Molecular Weight (calculated)

63067.3 Da

IEP (calculated)

7.047

GRAVY (calculated)

-0.214

Length

578 amino acids

Sequence
(BLAST)

001: MRFVLFFVCI CFLSFSAARA EGPYQFLDWE ITYGNISRLG VSQQAILING EFPGPKIECQ TNENLIINVR NNLSDPFLLS WSGLQQRKNS WQDGVSGTNC
101: PIPPGQNFTY RMQAKDQIGS FYYFPSLAFH KAAGGFGAIR IYSRPRIPIP FPPPADEYTV LIGDWYATNH KSLQDMLDSG KELPPPDGIL INGKGSTDAA
201: HFAVEQGKTY RLRISNVGLQ NTLNIRIQEH NMTLVEVEGT HTVQNTYSSL DVHVGQSLSV LFTADRPAKD YHVVVSARFT NATLLSTAVV RYAGSSGLAS
301: GPLPAGPTDD VDFSLNQARS IRTNLTASGP RPNPQGSYHY GSINVTRTIR LASSAVLVGG KRRYAVNGVS FAEADTPLKL ADYYNISGVF RLGGIPDAPA
401: AAATTGTAGG AATDDAPPPA ATGTGDGAAE EVRNETAVMD SDHRSFVEVV LENGEDSVQS WHLDGYSVFV VGMDVGTWSN KSRDGYNLVD AVSRCTVQVY
501: PRGWTAVLIA LDNVGMWNMR SEVWARRYLG QQFYLRVYTP SRSFRDELPM PDNALLCGRA TAAAATNSSR RLPLPRLY

Best Arabidopsis Sequence Match ( AT1G76160.1 )
(BLAST)

001: MAGSASFAAA LFIGLSLLFA VTAEDPYRFF EWNITYGDIY PLGVRQQGIL INGAFPGPDI HSVTNDNLII NVYNSLDEPF LLSWNGIQQR RNSFVDGVYG
101: TTCPIPPGKN YTYILQMKDQ IGSFYYFPSL GFHKAAGGFG GIRILSRPRI PVPFPDPAGD TTVLIGDWYK ANHTDLRAQL DNGKKLPLPD GILINGRSSG
201: ATLNVEQGKT YRFRISNVGL QDSLNFRIQD HKMKVVEVEG THTLQTTFSS LDVHVGQSYS VLVTADQTPR DYYVVVSSRF TSNVLTTTGI FRYSNSAGGV
301: SGPIPGGPTI QIDWSLNQAR AIRTNLSASG PRPNPQGSYH YGMINTTRTI RLASSAGQVD GKQRYAVNSV SFKPADTPLK IADYFKIDGV YRSGSIQYQP
401: TGGGIYLDTS VMQVDYRTFV EIIFENSEDI VQSWHLDGYS FWVVGMDGGQ WSPDSRNEYN LRDAVARCTV QVYPSSWTAI LIALDNVGMW NLRSEFWARQ
501: YLGQQLYLRV YTPSTSLRDE YPIPKNALLC GRASGRSTRP L

Arabidopsis Description

sks5Sks5 [Source:UniProtKB/TrEMBL;Acc:A0A178WJJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.