Factsheet for GSMUA_Achr1P15400_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	extracellular	73.66	74.23
GSMUA_Achr5P20270_001	Banana	extracellular	62.21	61.74
GSMUA_Achr11P...	Banana	extracellular	46.56	48.8
TraesCS7D01G019600.1	Wheat	plastid	46.95	46.95
Zm00001d045571_P001	Maize	extracellular	47.71	45.96
EER89054	Sorghum	extracellular	47.71	45.29
GSMUA_Achr1P00140_001	Banana	extracellular	41.98	45.27
Os06t0108600-00	Rice	extracellular	46.18	45.15
TraesCS4A01G470100.1	Wheat	extracellular	47.71	45.13
TraesCS7A01G022400.1	Wheat	extracellular	46.56	43.73
GSMUA_AchrUn_...	Banana	extracellular	35.5	40.97
GSMUA_Achr4P27910_001	Banana	extracellular	37.4	39.84
GSMUA_Achr4P28010_001	Banana	extracellular	37.02	39.43
GSMUA_Achr4P27950_001	Banana	extracellular	36.64	39.02
HORVU7Hr1G002440.2	Barley	extracellular, vacuole	47.71	37.54

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
EnsemblPlantsGene:GSMUA_Achr1G15400_001	EnsemblPlants:GSMUA_Achr1P15400_001	EnsemblPlants:GSMUA_Achr1T15400_001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M0S048	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002962830	SEG:seg

Description

Putative expansin-A30 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15400_001]

Coordinates

chr1:+:11573405..11574349

Molecular Weight (calculated)

27770.8 Da

IEP (calculated)

6.713

GRAVY (calculated)

0.084

Length

262 amino acids

Sequence
(BLAST)

001: MASSSSSSSL PWSLALLVLL AMAMRRAQGS FVATQWSPAH ATFYGDDSAS GTMGGACGYG DLYSTGYGTN TAALSSVMFS DGYGCGQCYE IRCSGAPACY
101: AGSPIVAVTA TNLCPPNWAL PSDNGGWCNP PRVHFDMAKP AFNQIADWNA GIVPVMYRRV ACQKTGGMRF QLQGNAYWLL VFVTNVGGGG DIAGMWVKGE
201: KTDWISMSHN WGASYQAFSC LGGQVLSFKV LSYTSQETLV AYTAAPANWV AGLTYEATTN FT

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.