Factsheet for Os06t0108600-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045571_P001	Maize	extracellular	67.16	66.18
EER89054	Sorghum	extracellular	67.16	65.22
TraesCS7D01G019600.1	Wheat	plastid	60.82	62.21
TraesCS7A01G022400.1	Wheat	extracellular	63.81	61.29
TraesCS4A01G470100.1	Wheat	extracellular	61.19	59.21
HORVU7Hr1G002440.2	Barley	extracellular, vacuole	64.18	51.65
Os10t0535900-00	Rice	extracellular	45.9	46.24
GSMUA_Achr1P15400_001	Banana	extracellular	45.15	46.18
Os10t0439100-00	Rice	extracellular	40.3	42.35
Os06t0718100-01	Rice	plastid	41.42	42.21
Os03t0428700-01	Rice	extracellular	39.18	41.02
Os03t0156000-00	Rice	extracellular	38.06	40.96
Os01t0249100-00	Rice	extracellular	32.84	40.37
Os05t0276500-01	Rice	extracellular	38.06	40.0
Os01t0248900-01	Rice	extracellular	37.31	39.84
Os03t0156300-00	Rice	extracellular	35.45	39.58
Os05t0277000-00	Rice	extracellular	36.57	39.52
Os03t0155900-01	Rice	extracellular	36.57	39.36
Os12t0546800-01	Rice	plasma membrane	32.09	29.66

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	EnsemblPlantsGene:Os06g0108600
EnsemblPlants:Os06t0108600-00	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842
PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF25	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI000393A94C	SEG:seg	:

Description

ALPHA-EXPANSIN 17Similar to Expansin-A17. (Os06t0108600-00)

Coordinates

chr6:-:511889..512791

Molecular Weight (calculated)

28624.7 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.039

Length

268 amino acids

Sequence
(BLAST)

001: NNPAIFLAAA LAVATAAQVV TAGFTTDLYW QQQPAPGAVT PYKTSDWHDG SATFYGDPSG MGDDFGGACG YVSNDIVSLY STKTAALSTP LFADGNGCGQ
101: CYELRCVKSP WCNPGSPSVV ITGTNLCPPN WYLPNDDGGW CNPPRHHFDM APPSFLKLAQ RVAGIVPVQY RRVPCQRTGG VRFCLQGNHY WLLLYVMNVG
201: GAGDVSSLSV KTSGGGGAWI QAAHNWGITY QVFAALDNSD GLTVKLTTYS TPQQTIIVSD AISPWWIT

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.