Factsheet for Os05t0277000-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0276500-01	Rice	extracellular	76.61	74.51
TraesCS5B01G548500.1	Wheat	extracellular	74.19	72.16
TraesCS5D01G535500.1	Wheat	extracellular	73.79	71.76
HORVU5Hr1G121370.1	Barley	extracellular	73.39	71.37
TraesCS4A01G339200.1	Wheat	extracellular	72.98	70.98
Os01t0248900-01	Rice	extracellular	69.35	68.53
Os01t0249100-00	Rice	extracellular	56.85	64.68
GSMUA_Achr11P...	Banana	extracellular	63.71	63.2
Os10t0439100-00	Rice	extracellular	60.48	58.82
Os03t0428700-01	Rice	extracellular	59.68	57.81
Os03t0156000-00	Rice	extracellular	53.63	53.41
Os03t0155900-01	Rice	extracellular	53.23	53.01
Os06t0718100-01	Rice	plastid	55.65	52.47
Os03t0156300-00	Rice	extracellular	50.0	51.67
Solyc07g063210.2.1	Tomato	extracellular	47.98	46.48
Os10t0535900-00	Rice	extracellular	48.39	45.11
VIT_19s0014g02910.t01	Wine grape	extracellular	45.97	44.36
AT3G15370.2	Thale cress	extracellular	47.18	41.49
Os06t0108600-00	Rice	extracellular	39.52	36.57
Os12t0546800-01	Rice	plasma membrane	40.32	34.48
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	48.79	27.19

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EntrezGene:4338279	EMBL:AC145273	ProteinID:BAF16992.1
ProteinID:BAS93118.1	ProteinID:EEE63075.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	GO:GO:0071555
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	EnsemblPlantsGene:Os05g0277000	EnsemblPlants:Os05t0277000-00
UniProt:P0C1Y4	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842
PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF32	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0000E123E9	RefSeq:XP_015638203.1	SEG:seg

Description

EXPA33Similar to Expansin Os-EXPA3. (Os05t0277000-00)

Coordinates

chr5:-:11418476..11419481

Molecular Weight (calculated)

26630.4 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.071

Length

248 amino acids

Sequence
(BLAST)

001: MAMPVVQVLL LCALAYQAVD AQWTPATATF YGGSDGAGTM GGACGYGNLY NAGYGLNNAA LSSALFNDGA MCGACYTIAC DTSQSTWCKP GTSITITATN
101: LCPPNYAKKS DAGGWCNPPR KHFDMSQPAW TSIAIYQAGI VPVNFKRVPC QKSGGIRFTI SGRDYFELVT VFNVGGSGVV AQVSIKGSKT DWMAMSRNWG
201: QNWQSNAYLN TQSLSFKVKL DDAREVTVWN IAPSNWNFGT TYTSNINF

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.