Factsheet for TraesCS4A01G339200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G535500.1	Wheat	extracellular	98.43	98.43
TraesCS5B01G548500.1	Wheat	extracellular	96.47	96.47
HORVU5Hr1G121370.1	Barley	extracellular	93.33	93.33
Os05t0277000-00	Rice	extracellular	70.98	72.98
TraesCS3A01G165900.1	Wheat	extracellular	68.24	70.45
TraesCS3A01G317900.1	Wheat	extracellular	68.24	69.88
TraesCS3A01G318000.1	Wheat	extracellular	67.45	69.08
TraesCS3A01G318100.1	Wheat	extracellular	67.06	68.67
GSMUA_Achr11P...	Banana	extracellular	65.49	66.8
TraesCS3A01G165600.1	Wheat	extracellular	63.92	63.92
TraesCS1A01G406900.1	Wheat	extracellular	61.96	62.2
TraesCS4A01G345000.1	Wheat	extracellular	61.96	62.2
TraesCS1A01G406800.1	Wheat	extracellular	61.57	61.33
TraesCS4A01G032600.1	Wheat	extracellular	60.0	60.47
TraesCS4A01G034200.1	Wheat	extracellular	58.43	58.66
TraesCS4A01G345100.1	Wheat	extracellular	50.59	57.33
TraesCS3A01G031700.1	Wheat	extracellular	44.31	54.59
TraesCS1A01G199400.1	Wheat	extracellular	47.45	46.72
Solyc07g063210.2.1	Tomato	extracellular	45.1	44.92
VIT_19s0014g02910.t01	Wine grape	extracellular	44.71	44.36
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	47.45	43.06
AT3G15370.2	Thale cress	extracellular	46.67	42.2
TraesCS7A01G022400.1	Wheat	extracellular	42.35	38.71
TraesCS4A01G470100.1	Wheat	extracellular	40.78	37.55
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	45.1	25.84

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF32	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G339200	EnsemblPlants:TraesCS4A01G339200.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:621009035..621010495

Molecular Weight (calculated)

27642.4 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.091

Length

255 amino acids

Sequence
(BLAST)

001: MEKQTAVALV LLSVLCGIAS HGVDAQYYWT TATATFYGGG DGSGTMGGAC GYGNLYSSGY GINNAALSTA LFNDGAMCGA CYTIYCDTGR SRMCKPGTQI
101: TVSATNFCPP NWALPSDNGG WCNPPRVHFD MSQPAWTSIA IYEAGIVPVV YRRVSCQKRD GIRFGISGRD YFELVVVTNV GGSGVVSQMW IKGSNTNWLA
201: MSRNWGANWQ SNAFLNGQRL SFRVRLDDGR EATASDVAPS NWWFGATYTS WVNFY

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.