Factsheet for TraesCS1A01G199300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, cytosol

Predictor Summary:

extracellular 1
plastid 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G203100.1	Wheat	extracellular	90.75	98.46
TraesCS1A01G199400.1	Wheat	extracellular	90.75	98.46
TraesCS1B01G214300.1	Wheat	extracellular	90.39	97.32
Os10t0535900-00	Rice	extracellular	70.46	74.44
Zm00001d047353_P001	Maize	extracellular	68.33	74.42
EER94586	Sorghum	extracellular	67.97	72.35
PGSC0003DMT400032527	Potato	extracellular	48.75	65.87
GSMUA_Achr10P...	Banana	extracellular	60.85	65.77
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	53.74	62.92
PGSC0003DMT400058522	Potato	plastid	54.45	62.45
KRH77459	Soybean	extracellular	57.3	61.92
KRH04002	Soybean	extracellular	58.36	61.89
GSMUA_Achr5P20270_001	Banana	extracellular	58.01	61.74
KRH27987	Soybean	extracellular	56.94	61.54
VIT_02s0025g04700.t01	Wine grape	extracellular	56.58	60.23
Bra026965.1-P	Field mustard	extracellular	56.23	60.08
CDY16014	Canola	extracellular	56.23	60.08
AT1G12560.1	Thale cress	extracellular	55.52	59.54
Bra019775.1-P	Field mustard	extracellular	55.16	58.94
CDX98053	Canola	extracellular	55.16	58.94
CDY57071	Canola	extracellular	55.16	58.94
CDY64890	Canola	extracellular	53.74	58.75
CDY21056	Canola	extracellular	54.8	58.56
CDY58613	Canola	extracellular	54.8	58.56
Bra016767.1-P	Field mustard	extracellular	54.8	58.56
Solyc08g080060.2.1	Tomato	extracellular	54.45	56.88
AT1G62980.1	Thale cress	extracellular	51.25	56.03
CDY69805	Canola	extracellular	29.89	54.55
KRH57276	Soybean	extracellular	42.7	52.4
TraesCS3A01G165900.1	Wheat	extracellular	43.77	49.8
TraesCS3A01G317900.1	Wheat	extracellular	43.77	49.4
TraesCS7A01G022400.1	Wheat	extracellular	47.33	47.67
TraesCS4A01G339200.1	Wheat	extracellular	43.06	47.45
TraesCS3A01G318000.1	Wheat	extracellular	41.99	47.39
TraesCS3A01G318100.1	Wheat	extracellular	41.99	47.39
TraesCS4A01G470100.1	Wheat	extracellular	45.91	46.57
TraesCS4A01G034200.1	Wheat	extracellular	41.64	46.06
TraesCS1A01G406900.1	Wheat	extracellular	41.28	45.67
Solyc08g007780.2.1	Tomato	extracellular	20.64	45.67
TraesCS4A01G345000.1	Wheat	extracellular	41.28	45.67
TraesCS1A01G406800.1	Wheat	extracellular	41.28	45.31
TraesCS3A01G165600.1	Wheat	extracellular	40.93	45.1
TraesCS4A01G345100.1	Wheat	extracellular	35.94	44.89
TraesCS4A01G032600.1	Wheat	extracellular	39.86	44.27
TraesCS3A01G031700.1	Wheat	extracellular	31.67	43.0

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	EnsemblPlantsGene:TraesCS1A01G199300	EnsemblPlants:TraesCS1A01G199300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:358151459..358152398

Molecular Weight (calculated)

29872.5 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.007

Length

281 amino acids

Sequence
(BLAST)

001: MPSSAELTQE ESTATRQSEA KAMASAASKS AAVLVLLVSL AGVATTVDAR FRAMQWTPAH ATFYGDEATA ETMGGACGYD ITAGYGADTA ALSSTLFLDG
101: YGCGTCYQIR CVGATACYRG SPVITVTATN LCPPNWAQDT NNGGWCNPPR THFDLAIPAF KKMADWHAGI VPVMYRRVPC MRKGGIRFAF QGNPHWLLVY
201: VTNVGGAGDV GEMWVKGNGG MGWLRMSHNW GASYQAFRQL GGQALSFKLT SYTTGLTIVA ADAAPASWSI GLTYQARANF K

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.