Factsheet for Solyc08g080060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058522	Potato	plastid	87.73	96.33
VIT_02s0025g04700.t01	Wine grape	extracellular	67.66	68.94
KRH77459	Soybean	extracellular	66.17	68.46
KRH27987	Soybean	extracellular	65.8	68.08
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	60.59	67.92
CDY69805	Canola	extracellular	37.92	66.23
GSMUA_Achr10P...	Banana	extracellular	63.2	65.38
KRH04002	Soybean	extracellular	64.31	65.28
Zm00001d047353_P001	Maize	extracellular	62.45	65.12
Bra016767.1-P	Field mustard	extracellular	63.57	65.02
CDY21056	Canola	extracellular	63.57	65.02
CDY58613	Canola	extracellular	63.2	64.64
CDY64890	Canola	extracellular	61.71	64.59
CDY57071	Canola	extracellular	62.45	63.88
CDX98053	Canola	extracellular	62.45	63.88
Bra019775.1-P	Field mustard	extracellular	62.45	63.88
EER94586	Sorghum	extracellular	62.08	63.26
CDY16014	Canola	extracellular	61.71	63.12
Bra026965.1-P	Field mustard	extracellular	61.71	63.12
AT1G12560.1	Thale cress	extracellular	60.97	62.6
AT1G62980.1	Thale cress	extracellular	59.48	62.26
GSMUA_Achr5P20270_001	Banana	extracellular	60.97	62.12
Os10t0535900-00	Rice	extracellular	60.97	61.65
TraesCS1D01G203100.1	Wheat	extracellular	57.62	59.85
TraesCS1A01G199400.1	Wheat	extracellular	57.62	59.85
TraesCS1B01G214300.1	Wheat	extracellular	57.62	59.39
TraesCS1B01G214200.1	Wheat	extracellular	56.88	58.62
KRH57276	Soybean	extracellular	49.07	57.64
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	56.88	54.45
Solyc03g115270.1.1	Tomato	extracellular	50.56	52.51
Solyc08g007780.2.1	Tomato	extracellular	24.16	51.18
Solyc03g115350.1.1	Tomato	extracellular	47.96	50.0
Solyc03g115310.1.1	Tomato	extracellular	47.96	49.81
Solyc03g115320.1.1	Tomato	extracellular	47.58	49.23
Solyc03g115300.1.1	Tomato	extracellular	45.35	47.1
Solyc03g115340.1.1	Tomato	mitochondrion	29.74	45.2
Solyc07g063210.2.1	Tomato	extracellular	39.78	41.8
HORVU1Hr1G051590.1	Barley	plastid	19.7	17.67

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:K4CP06	PFAM:PF01357
PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867
PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc08g080060.2	EnsemblPlants:Solyc08g080060.2.1	TMHMM:TMhelix	UniParc:UPI000276B6FB	:

Description

No Description!

Coordinates

chr8:+:63396889..63398536

Molecular Weight (calculated)

29399.4 Da

IEP (calculated)

9.680

GRAVY (calculated)

0.056

Length

269 amino acids

Sequence
(BLAST)

001: MASFNYKLSL IFLIIVSMAF FHQAMAAASY STPSISPTMF KAMPWKQAFA TFYGDETASE TMGGACGYGN LFNSGYGTAT AALSTVLFGN GYSCGQCFQI
101: MCVKSKFCYT GFTTITATNL CPPNWSQDSN HGGWCNPPRQ HFDMSKPAFM KIAQWKAGIV PVSYRRVPCI KKGGIKFALQ GNGYWLLVYV MNVAGGGDVA
201: SMLVKGSKTG WMSMSHNWGA SYQAFATLSG QTLSFKLTSY TSHQTIIVNN VAPSNWRVGM TYQANVNFR

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.