Factsheet for Bra036638.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64890	Canola	extracellular	100.0	93.39
AT1G62980.1	Thale cress	extracellular	87.08	81.32
Bra016767.1-P	Field mustard	extracellular	77.5	70.72
Bra019775.1-P	Field mustard	extracellular	76.25	69.58
Bra026965.1-P	Field mustard	extracellular	76.25	69.58
PGSC0003DMT400032527	Potato	extracellular	58.33	67.31
PGSC0003DMT400058522	Potato	plastid	67.08	65.71
KRH77459	Soybean	extracellular	67.08	61.92
KRH04002	Soybean	extracellular	67.5	61.13
KRH27987	Soybean	extracellular	65.83	60.77
VIT_02s0025g04700.t01	Wine grape	extracellular	66.67	60.61
Solyc08g080060.2.1	Tomato	extracellular	67.92	60.59
Zm00001d047353_P001	Maize	extracellular	65.0	60.47
EER94586	Sorghum	extracellular	65.0	59.09
GSMUA_Achr10P...	Banana	extracellular	63.75	58.85
TraesCS1D01G203100.1	Wheat	extracellular	63.33	58.69
GSMUA_Achr5P20270_001	Banana	extracellular	64.17	58.33
TraesCS1A01G199400.1	Wheat	extracellular	62.92	58.3
TraesCS1B01G214200.1	Wheat	extracellular	62.92	57.85
Os10t0535900-00	Rice	extracellular	63.75	57.52
TraesCS1B01G214300.1	Wheat	extracellular	62.5	57.47
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	62.92	53.74
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	13.75	52.38
KRH57276	Soybean	extracellular	49.58	51.97
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	46.25	48.26
Bra000142.1-P	Field mustard	extracellular	32.92	47.88
Bra023523.1-P	Field mustard	cytosol	46.25	47.44
Bra033068.1-P	Field mustard	cytosol	18.75	47.37
Bra016473.1-P	Field mustard	extracellular	31.67	44.71
Bra001593.1-P	Field mustard	extracellular	46.25	44.22
Solyc08g007780.2.1	Tomato	extracellular	22.92	43.31
Bra033099.1-P	Field mustard	extracellular	43.75	42.68
Bra030353.1-P	Field mustard	extracellular	44.17	41.57
Bra025397.1-P	Field mustard	extracellular	42.5	40.96
Bra028232.1-P	Field mustard	extracellular	44.58	39.34
HORVU1Hr1G051590.1	Barley	plastid	18.75	15.0

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra036638	EnsemblPlants:Bra036638.1	EnsemblPlants:Bra036638.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4F6C9	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002541A0E	:	:

Description

AT1G62980 (E=9e-130) ATEXPA18, EXP18, ATEXP18, ATHEXP ALPHA 1.25 | ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)

Coordinates

chrA09:+:5936800..5938249

Molecular Weight (calculated)

26052.5 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.271

Length

240 amino acids

Sequence
(BLAST)

001: MIGTSSAAYA GGPWRRASAT FYGDETARET MGGACGYGNL WNSGYGAATS ALSTVLFNDG YSCGQCFQIR CVSSPNCYYG SPATVVTATN ICPPNWGQNS
101: NNGGWCNPPR AHFDLTKPAF MKIANWKAGI IPISYRRVAC KRTGGIRFKF EGNGYWLLVY VMNVGGAGDI KTMAVKGSRT NWINMSHNWG ASYQAFSSLY
201: GQSLSFRLTS YTTRQTIYAW NAAPASWSAG QTYKSNANFS

Best Arabidopsis Sequence Match ( AT1G62980.1 )
(BLAST)

001: MDQNLYRKCL VILSMMAMIG TSMATYAGTP WRTASATFYG DDTGSATMGG ACGYGNMYDS GYGVATTALS TALFNEGYAC GQCFQLKCVS SPNCYYGSPA
101: TVVTATNICP PNYGQASNNG GWCNPPRVHF DLTKPAFMKI ANWKAGIIPV SYRRVACKKI GGIRFKFEGN GYWLLVYVMN VGGPGDIKTM AVKGSRTGWI
201: NMSHNWGASY QAFSSLYGQS LSFRLTSYTT RQTIYAYNAA PASWSAGKTY QSKANFN

Arabidopsis Description

EXPA18Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.