Factsheet for Bra000142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	27.88	73.02
Bra033068.1-P	Field mustard	cytosol	38.18	66.32
Bra016473.1-P	Field mustard	extracellular	44.85	43.53
Bra023523.1-P	Field mustard	cytosol	47.88	33.76
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	47.88	32.92
Bra030353.1-P	Field mustard	extracellular	48.48	31.37
Bra033099.1-P	Field mustard	extracellular	46.67	31.3
Bra025397.1-P	Field mustard	extracellular	46.67	30.92
Bra019775.1-P	Field mustard	extracellular	48.48	30.42
Bra026965.1-P	Field mustard	extracellular	48.48	30.42
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	41.21	29.57
Bra016767.1-P	Field mustard	extracellular	46.67	29.28
Bra028232.1-P	Field mustard	extracellular	47.88	29.04
Bra001593.1-P	Field mustard	extracellular	43.64	28.69

Protein Annotations

Gene3D:2.40.40.10	MapMan:21.4.2.1	EnsemblPlantsGene:Bra000142	EnsemblPlants:Bra000142.1	EnsemblPlants:Bra000142.1-P	InterPro:Expan_Lol_pI
InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR036908	UniProt:M4C7G4	PFAM:PF03330
PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PANTHER:PTHR31867	PANTHER:PTHR31867:SF76	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI00025401EE	:

Description

AT2G39700 (E=4e-087) ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6 | ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)

Coordinates

chrA03:-:9520176..9521678

Molecular Weight (calculated)

17485.8 Da

IEP (calculated)

7.678

GRAVY (calculated)

0.129

Length

165 amino acids

Sequence
(BLAST)

001: MAVIKLAILF TAYLLFNLAD ARIPGVYSGG AWQNAHATFY GGSDASGTMG GACGYGNLYS QGYGTNTAAL STALFNNGMS CGACFELKCA NDPQWCHSGS
101: PSILITATNF CPPNFAQASD NGGWCNPPRE HFDLAMPVFL KIAQYRAGIV PVSYRSLCKT VTLTQ

Best Arabidopsis Sequence Match ( AT2G28950.1 )
(BLAST)

001: MAMLGLVLSV LTTILALSEA RIPGVYNGGG WETAHATFYG GSDASGTMGG ACGYGNLYSQ GYGVNTAALS TALFNNGFSC GACFELKCAS DPKWCHSGSP
101: SIFITATNFC PPNFAQPSDN GGWCNPPRPH FDLAMPMFLK IAEYRAGIVP VSFRRVPCRK RGGIRFTING FRYFNLVLVT NVAGAGNIVR LGVKGTHTSW
201: MTMSRNWGQN WQSNSVLVGQ SLSFRVTSSD RRSSTSWNIA PANWKFGQTF MGKNFRV

Arabidopsis Description

EXPA6EXPA6 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.