Factsheet for Bra023523.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85546	Canola	extracellular	99.15	91.7
CDX90986	Canola	extracellular	96.15	88.93
Solyc03g115310.1.1	Tomato	extracellular	63.25	57.14
Solyc03g115270.1.1	Tomato	extracellular	62.82	56.76
Solyc03g115350.1.1	Tomato	extracellular	61.97	56.2
Solyc03g115320.1.1	Tomato	extracellular	61.97	55.77
Bra033099.1-P	Field mustard	extracellular	58.55	55.69
Solyc03g115300.1.1	Tomato	extracellular	60.68	54.83
Solyc03g115340.1.1	Tomato	mitochondrion	41.03	54.24
Bra030353.1-P	Field mustard	extracellular	58.97	54.12
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	14.53	53.97
Bra025397.1-P	Field mustard	extracellular	57.27	53.82
Bra028232.1-P	Field mustard	extracellular	61.54	52.94
Bra033068.1-P	Field mustard	cytosol	21.37	52.63
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	52.56	49.6
Bra000142.1-P	Field mustard	extracellular	33.76	47.88
TraesCS7D01G314100.1	Wheat	extracellular	52.56	47.67
HORVU7Hr1G075680.1	Barley	extracellular	52.56	47.67
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	45.73	46.52
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	47.44	46.25
Bra016767.1-P	Field mustard	extracellular	50.85	45.25
GSMUA_Achr4P27950_001	Banana	extracellular	47.44	45.12
Bra026965.1-P	Field mustard	extracellular	50.43	44.87
Bra019775.1-P	Field mustard	extracellular	50.0	44.49
GSMUA_Achr4P27910_001	Banana	extracellular	46.58	44.31
GSMUA_Achr4P28010_001	Banana	extracellular	46.58	44.31
Bra001593.1-P	Field mustard	extracellular	45.73	42.63
Zm00001d035083_P001	Maize	extracellular	50.43	42.6
EES14420	Sorghum	extracellular	47.86	42.11
Bra016473.1-P	Field mustard	extracellular	30.34	41.76
Os12t0546800-01	Rice	plasma membrane	45.3	36.55
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	56.41	32.2
PGSC0003DMT400063363	Potato	extracellular	63.25	30.33

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra023523	EnsemblPlants:Bra023523.1	EnsemblPlants:Bra023523.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4E420	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF33	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002543654	SEG:seg	:

Description

AT5G39280 (E=2e-079) ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17 | ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)

Coordinates

chrA02:+:3774492..3775669

Molecular Weight (calculated)

25726.9 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.191

Length

234 amino acids

Sequence
(BLAST)

001: MSTSAATNAE NGWVDAHATF YGGRKGEETM QGACGYGSLF EQSYGLATAA LSTALFNNGT TCGACYEIIC VNAPQSCIKG ARPIRVTATN WCPPNYRDGS
101: WCNPPRKHFD LSLPIFLKIA KYKAGIVPVK YRRVMCPKKS GVKFQLAGNP YFLMVTVFNV GRVGVVVEVK VKGSKTGWIQ MTRNWGQVWD TNTVLTGQSL
201: SFLVATSDGK RLKFNNVAPS NWQFDKTYDG KINF

Best Arabidopsis Sequence Match ( AT5G39270.1 )
(BLAST)

001: MKLLEKMIYV EFLMIIMVIW VVPMSYGHGA MIGNAVEAPD VAEAPGINDP SKALDTNWYD ARATFYGDIH GGDTQQGACG YGNLFRQGYG LATAALSTAL
101: FNDGYTCGAC YEIMCTRDPQ WCLPGSVKIT ATNFCPANYS KTTDLWCNPP QKHFDLSLAM FLKIAKYKAG VVPVRYRRIP CSKTGGVKFE TKGNPYFLMV
201: LIYNVGGAGD IKYVQVKGNK TGWITMKKNW GQNWTTITVL TGQGLSFRVT TSDGITKDFW NVMPKNWGFG QTFDGRINF

Arabidopsis Description

EXPA22Expansin-A22 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL80]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.