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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • golgi 2
  • nucleus 1
  • cytosol 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g115340.1.1 Tomato mitochondrion 36.1 83.62
PGSC0003DMT400063363 Potato extracellular 87.32 73.36
VIT_14s0068g00600.t01 Wine grape extracellular 37.8 61.75
VIT_07s0005g04850.t01 Wine grape extracellular 35.37 60.42
Bra023523.1-P Field mustard cytosol 32.2 56.41
CDY04077 Canola extracellular 32.68 54.47
CDY44393 Canola extracellular 32.44 54.06
Bra033099.1-P Field mustard extracellular 32.44 54.06
Bra025397.1-P Field mustard extracellular 32.2 53.01
CDX86367 Canola extracellular 32.2 53.01
CDX85546 Canola extracellular 32.44 52.57
KRH44992 Soybean extracellular 33.17 52.51
CDX85270 Canola extracellular 31.71 52.21
KRH01265 Soybean extracellular 29.02 52.19
PGSC0003DMT400032527 Potato extracellular 26.34 51.92
CDX90986 Canola extracellular 31.95 51.78
Bra030353.1-P Field mustard extracellular 31.95 51.37
CDY15952 Canola extracellular 31.95 51.37
AT5G39280.1 Thale cress extracellular 33.17 49.45
AT5G39300.1 Thale cress extracellular 33.17 49.28
CDX99666 Canola extracellular 32.2 49.07
CDX74479 Canola extracellular 32.2 48.53
CDY37873 Canola extracellular 32.2 48.53
Bra028232.1-P Field mustard extracellular 31.95 48.16
AT5G39270.1 Thale cress extracellular 32.2 47.31
AT5G39290.1 Thale cress extracellular 32.2 47.31
PGSC0003DMT400058522 Potato plastid 27.8 46.53
AT5G39260.1 Thale cress extracellular 29.51 46.18
TraesCS7B01G218200.1 Wheat cytosol, extracellular, plastid 27.07 44.76
GSMUA_Achr4P27950_001 Banana extracellular 26.59 44.31
GSMUA_Achr4P27910_001 Banana extracellular 26.34 43.9
TraesCS7D01G314100.1 Wheat extracellular 27.56 43.8
AT5G39310.1 Thale cress extracellular 33.17 43.59
GSMUA_Achr4P28010_001 Banana extracellular 26.1 43.5
HORVU7Hr1G075680.1 Barley extracellular 26.59 42.25
EES14420 Sorghum extracellular 27.07 41.73
Zm00001d035083_P001 Maize extracellular 26.59 39.35
Os12t0546800-01 Rice plasma membrane 22.93 32.41
PGSC0003DMT400032334 Potato cytosol, nucleus, vacuole 26.59 24.49
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:21.4.2.1InterPro:Expan_Lol_pIInterPro:ExpansinInterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBDInterPro:Expansin_CBD_sfGO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005623
GO:GO:0008150GO:GO:0009664GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0030312
InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908UniProt:M1CAJ5PFAM:PF01357
PFAM:PF03330EnsemblPlantsGene:PGSC0003DMG400024647PGSC:PGSC0003DMG400024647EnsemblPlants:PGSC0003DMT400063359PRINTS:PR01225PRINTS:PR01226
PFscan:PS50842PFscan:PS50843PANTHER:PTHR31867PANTHER:PTHR31867:SF33InterPro:RlpA-like_DPBBInterPro:RlpA-like_sf
SMART:SM00837SUPFAM:SSF49590SUPFAM:SSF50685UniParc:UPI000295C7F6SEG:seg:
Description
Expansin [Source:PGSC_GENE;Acc:PGSC0003DMG400024647]
Coordinates
chr3:-:55220358..55224943
Molecular Weight (calculated)
44951.8 Da
IEP (calculated)
8.647
GRAVY (calculated)
-0.160
Length
410 amino acids
Sequence
(BLAST)
001: MVSNCNVYSY EGACGYGDLF KQGYGLETTA LSTALFNKGS TCGACFQIMC VNAPKACHPG QVITVTATNF CPPNYTKTKD VWCNPPQQHF DLTMPMFIKI
101: AEQNAGVVPV VYRRVTCQKK GGLKFEINGN SNWILLLVFN VGGVGDVVNV KIKGSKTGWL PMKRNWGQNW QASVQLAGQT LSFQVQTSDG KLVQSDNVAP
201: ANWQFEGACG YGDLFKQGYG LETAALSTAL FNNGSTCGAC FQIKCVNAPK ACHPDQIITI TATNFCPPNY TKTTDVWCNP PQQHFDLSLP MFLKIAEYKA
301: GVVPVVYRRV TCQKKGGLKF EIKGNSNWIL VLVFNVGGVG DVVNVKIKGS KTEWLPMSRN WGQNWQASVQ LGGQSLSFQV QTSDGKLVQS DNVVPDNWQF
401: GQTFEAKNNF
Best Arabidopsis Sequence Match ( AT5G39280.1 )
(BLAST)
001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF
Arabidopsis Description
EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.