Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- nucleus 1
- cytosol 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc03g115340.1.1 | Tomato | mitochondrion | 36.1 | 83.62 |
PGSC0003DMT400063363 | Potato | extracellular | 87.32 | 73.36 |
VIT_14s0068g00600.t01 | Wine grape | extracellular | 37.8 | 61.75 |
VIT_07s0005g04850.t01 | Wine grape | extracellular | 35.37 | 60.42 |
Bra023523.1-P | Field mustard | cytosol | 32.2 | 56.41 |
CDY04077 | Canola | extracellular | 32.68 | 54.47 |
CDY44393 | Canola | extracellular | 32.44 | 54.06 |
Bra033099.1-P | Field mustard | extracellular | 32.44 | 54.06 |
Bra025397.1-P | Field mustard | extracellular | 32.2 | 53.01 |
CDX86367 | Canola | extracellular | 32.2 | 53.01 |
CDX85546 | Canola | extracellular | 32.44 | 52.57 |
KRH44992 | Soybean | extracellular | 33.17 | 52.51 |
CDX85270 | Canola | extracellular | 31.71 | 52.21 |
KRH01265 | Soybean | extracellular | 29.02 | 52.19 |
PGSC0003DMT400032527 | Potato | extracellular | 26.34 | 51.92 |
CDX90986 | Canola | extracellular | 31.95 | 51.78 |
Bra030353.1-P | Field mustard | extracellular | 31.95 | 51.37 |
CDY15952 | Canola | extracellular | 31.95 | 51.37 |
AT5G39280.1 | Thale cress | extracellular | 33.17 | 49.45 |
AT5G39300.1 | Thale cress | extracellular | 33.17 | 49.28 |
CDX99666 | Canola | extracellular | 32.2 | 49.07 |
CDX74479 | Canola | extracellular | 32.2 | 48.53 |
CDY37873 | Canola | extracellular | 32.2 | 48.53 |
Bra028232.1-P | Field mustard | extracellular | 31.95 | 48.16 |
AT5G39270.1 | Thale cress | extracellular | 32.2 | 47.31 |
AT5G39290.1 | Thale cress | extracellular | 32.2 | 47.31 |
PGSC0003DMT400058522 | Potato | plastid | 27.8 | 46.53 |
AT5G39260.1 | Thale cress | extracellular | 29.51 | 46.18 |
TraesCS7B01G218200.1 | Wheat | cytosol, extracellular, plastid | 27.07 | 44.76 |
GSMUA_Achr4P27950_001 | Banana | extracellular | 26.59 | 44.31 |
GSMUA_Achr4P27910_001 | Banana | extracellular | 26.34 | 43.9 |
TraesCS7D01G314100.1 | Wheat | extracellular | 27.56 | 43.8 |
AT5G39310.1 | Thale cress | extracellular | 33.17 | 43.59 |
GSMUA_Achr4P28010_001 | Banana | extracellular | 26.1 | 43.5 |
HORVU7Hr1G075680.1 | Barley | extracellular | 26.59 | 42.25 |
EES14420 | Sorghum | extracellular | 27.07 | 41.73 |
Zm00001d035083_P001 | Maize | extracellular | 26.59 | 39.35 |
Os12t0546800-01 | Rice | plasma membrane | 22.93 | 32.41 |
PGSC0003DMT400032334 | Potato | cytosol, nucleus, vacuole | 26.59 | 24.49 |
Protein Annotations
Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.1 | InterPro:Expan_Lol_pI | InterPro:Expansin | InterPro:Expansin/allergen_DPBB_dom |
InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
GO:GO:0008150 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030312 |
InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | UniProt:M1CAJ5 | PFAM:PF01357 |
PFAM:PF03330 | EnsemblPlantsGene:PGSC0003DMG400024647 | PGSC:PGSC0003DMG400024647 | EnsemblPlants:PGSC0003DMT400063359 | PRINTS:PR01225 | PRINTS:PR01226 |
PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31867 | PANTHER:PTHR31867:SF33 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf |
SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 | UniParc:UPI000295C7F6 | SEG:seg | : |
Description
Expansin [Source:PGSC_GENE;Acc:PGSC0003DMG400024647]
Coordinates
chr3:-:55220358..55224943
Molecular Weight (calculated)
44951.8 Da
IEP (calculated)
8.647
GRAVY (calculated)
-0.160
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSNCNVYSY EGACGYGDLF KQGYGLETTA LSTALFNKGS TCGACFQIMC VNAPKACHPG QVITVTATNF CPPNYTKTKD VWCNPPQQHF DLTMPMFIKI
101: AEQNAGVVPV VYRRVTCQKK GGLKFEINGN SNWILLLVFN VGGVGDVVNV KIKGSKTGWL PMKRNWGQNW QASVQLAGQT LSFQVQTSDG KLVQSDNVAP
201: ANWQFEGACG YGDLFKQGYG LETAALSTAL FNNGSTCGAC FQIKCVNAPK ACHPDQIITI TATNFCPPNY TKTTDVWCNP PQQHFDLSLP MFLKIAEYKA
301: GVVPVVYRRV TCQKKGGLKF EIKGNSNWIL VLVFNVGGVG DVVNVKIKGS KTEWLPMSRN WGQNWQASVQ LGGQSLSFQV QTSDGKLVQS DNVVPDNWQF
401: GQTFEAKNNF
101: AEQNAGVVPV VYRRVTCQKK GGLKFEINGN SNWILLLVFN VGGVGDVVNV KIKGSKTGWL PMKRNWGQNW QASVQLAGQT LSFQVQTSDG KLVQSDNVAP
201: ANWQFEGACG YGDLFKQGYG LETAALSTAL FNNGSTCGAC FQIKCVNAPK ACHPDQIITI TATNFCPPNY TKTTDVWCNP PQQHFDLSLP MFLKIAEYKA
301: GVVPVVYRRV TCQKKGGLKF EIKGNSNWIL VLVFNVGGVG DVVNVKIKGS KTEWLPMSRN WGQNWQASVQ LGGQSLSFQV QTSDGKLVQS DNVVPDNWQF
401: GQTFEAKNNF
001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF
Arabidopsis Description
EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.