Factsheet for PGSC0003DMT400063363

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	73.36	87.32
Solyc03g115350.1.1	Tomato	extracellular	44.26	83.72
VIT_14s0068g00600.t01	Wine grape	extracellular	35.25	68.53
VIT_07s0005g04850.t01	Wine grape	extracellular	31.76	64.58
Bra023523.1-P	Field mustard	cytosol	30.33	63.25
CDY04077	Canola	extracellular	30.53	60.57
CDX85546	Canola	extracellular	31.15	60.08
Bra033099.1-P	Field mustard	extracellular	29.92	59.35
CDY44393	Canola	extracellular	29.92	59.35
KRH01265	Soybean	extracellular	27.66	59.21
CDX90986	Canola	extracellular	30.53	58.89
CDX86367	Canola	extracellular	29.51	57.83
Bra025397.1-P	Field mustard	extracellular	29.51	57.83
KRH44992	Soybean	extracellular	30.53	57.53
CDX85270	Canola	extracellular	28.89	56.63
Bra030353.1-P	Field mustard	extracellular	29.1	55.69
CDY15952	Canola	extracellular	29.1	55.69
CDX99666	Canola	extracellular	29.92	54.28
AT5G39280.1	Thale cress	extracellular	30.53	54.18
AT5G39300.1	Thale cress	extracellular	30.53	53.99
CDY37873	Canola	extracellular	29.51	52.94
CDX74479	Canola	extracellular	29.51	52.94
Bra028232.1-P	Field mustard	extracellular	29.3	52.57
PGSC0003DMT400032527	Potato	extracellular	21.93	51.44
PGSC0003DMT400058522	Potato	plastid	25.82	51.43
AT5G39270.1	Thale cress	extracellular	29.3	51.25
AT5G39290.1	Thale cress	extracellular	29.3	51.25
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	25.61	50.4
GSMUA_Achr4P27950_001	Banana	extracellular	25.2	50.0
GSMUA_Achr4P27910_001	Banana	extracellular	25.0	49.59
TraesCS7D01G314100.1	Wheat	extracellular	26.02	49.22
AT5G39310.1	Thale cress	extracellular	31.35	49.04
GSMUA_Achr4P28010_001	Banana	extracellular	24.59	48.78
HORVU7Hr1G075680.1	Barley	extracellular	25.41	48.06
AT5G39260.1	Thale cress	extracellular	25.61	47.71
EES14420	Sorghum	extracellular	24.59	45.11
Zm00001d035083_P001	Maize	extracellular	24.8	43.68
Os12t0546800-01	Rice	plasma membrane	20.9	35.17
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	22.75	24.94

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:M1CAJ6	PFAM:PF01357
PFAM:PF03330	EnsemblPlantsGene:PGSC0003DMG400024648	PGSC:PGSC0003DMG400024648	EnsemblPlants:PGSC0003DMT400063363	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF33	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002955C55	SEG:seg

Description

Expansin [Source:PGSC_GENE;Acc:PGSC0003DMG400024648]

Coordinates

chr3:-:55233818..55238034

Molecular Weight (calculated)

54495.2 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.291

Length

488 amino acids

Sequence
(BLAST)

001: MARHQSFFIL FITFNIILLV EAYESKEVEG NLHANGWKNA RATFYGDMSG GETMQGACGY GDLFRQGYGL ETAALSTALF NSGSTCGACF QIMCVDAPKA
101: CHPGQIITIT ATNFCPPNYT KTEDIWCNPP QHHFDLSLPM FLKIAEYKAG VVPVVYRRVT CQKKGGLKFE MKGNPNWILV LVFNVGDVGD VVNMKIKGSK
201: TGWLPMKRNW GQKWEISQQL IGQSLSFQVQ TSDGKWVQSD NVVPHNWQFE RYEGKKVEGN LDEQGWKNAR ATFYGDMGGN ETMQGACGYG DLFKQGYGLE
301: TAALSTELFN NGSTCGACFQ IKCVNAPKSC HPDQIITITA TNFCPPNYTK TTDVWCNPPQ QHFDLSLPMF LKIAEYKAGV VPVVYRRVTC QKKGGLKFEI
401: KGNSNWILVL VFNVGDVGDV VNMKIKGSKT GWLPMKRNWG QKWEISQQLI GQSLSFQVQT SDGKWVQSDN VAPANWQFGQ TFEAKNNF

Best Arabidopsis Sequence Match ( AT5G39280.1 )
(BLAST)

001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF

Arabidopsis Description

EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.