Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023523.1-P | Field mustard | cytosol | 88.93 | 96.15 |
| CDX85546 | Canola | extracellular | 95.65 | 95.65 |
| Solyc03g115310.1.1 | Tomato | extracellular | 58.89 | 57.53 |
| CDY44393 | Canola | extracellular | 55.73 | 57.32 |
| CDY04077 | Canola | extracellular | 55.73 | 57.32 |
| Solyc03g115270.1.1 | Tomato | extracellular | 58.5 | 57.14 |
| Solyc03g115350.1.1 | Tomato | extracellular | 57.71 | 56.59 |
| Solyc03g115320.1.1 | Tomato | extracellular | 58.1 | 56.54 |
| Solyc03g115300.1.1 | Tomato | extracellular | 57.71 | 56.37 |
| CDX86367 | Canola | extracellular | 54.15 | 55.02 |
| CDX85270 | Canola | extracellular | 53.36 | 54.22 |
| CDY15952 | Canola | extracellular | 53.75 | 53.33 |
| CDY44069 | Canola | extracellular | 32.41 | 52.56 |
| Solyc03g115340.1.1 | Tomato | mitochondrion | 36.76 | 52.54 |
| CDX74479 | Canola | extracellular | 56.13 | 52.21 |
| CDY37873 | Canola | extracellular | 56.13 | 52.21 |
| CDX99666 | Canola | extracellular | 54.55 | 51.3 |
| TraesCS7B01G218200.1 | Wheat | cytosol, extracellular, plastid | 49.01 | 50.0 |
| CDY66063 | Canola | cytosol, extracellular, plastid | 32.02 | 49.09 |
| TraesCS7D01G314100.1 | Wheat | extracellular | 49.01 | 48.06 |
| HORVU7Hr1G075680.1 | Barley | extracellular | 49.01 | 48.06 |
| CDY69805 | Canola | extracellular | 28.85 | 47.4 |
| CDY71009 | Canola | extracellular | 37.15 | 46.77 |
| CDY71742 | Canola | extracellular | 37.15 | 46.77 |
| GSMUA_Achr4P27950_001 | Banana | extracellular | 45.06 | 46.34 |
| GSMUA_Achr4P27910_001 | Banana | extracellular | 44.27 | 45.53 |
| GSMUA_Achr4P28010_001 | Banana | extracellular | 44.27 | 45.53 |
| CDX75827 | Canola | extracellular | 38.74 | 44.14 |
| CDY21056 | Canola | extracellular | 45.85 | 44.11 |
| CDY58613 | Canola | extracellular | 45.85 | 44.11 |
| Zm00001d035083_P001 | Maize | extracellular | 48.22 | 44.04 |
| EES14420 | Sorghum | extracellular | 46.25 | 43.98 |
| CDX97663 | Canola | extracellular | 43.48 | 43.82 |
| CDY16014 | Canola | extracellular | 45.45 | 43.73 |
| CDY64890 | Canola | extracellular | 44.27 | 43.58 |
| CDX98053 | Canola | extracellular | 45.06 | 43.35 |
| CDX98555 | Canola | extracellular | 42.69 | 43.03 |
| CDY57071 | Canola | extracellular | 44.66 | 42.97 |
| CDX82436 | Canola | extracellular | 41.9 | 42.23 |
| CDY44426 | Canola | extracellular | 18.58 | 38.84 |
| Os12t0546800-01 | Rice | plasma membrane | 41.5 | 36.21 |
| PGSC0003DMT400063359 | Potato | cytosol, plastid, vacuole | 51.78 | 31.95 |
| PGSC0003DMT400063363 | Potato | extracellular | 58.89 | 30.53 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.1 | GO:A0A078DP13 | EnsemblPlants:CDX90986 | ProteinID:CDX90986 |
| ProteinID:CDX90986.1 | InterPro:Expan_Lol_pI | InterPro:Expansin | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016043 |
| EnsemblPlantsGene:GSBRNA2T00151745001 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | PFAM:PF01357 |
| PFAM:PF03330 | PRINTS:PR01225 | PRINTS:PR01226 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31867 |
| PANTHER:PTHR31867:SF33 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 |
| SignalP:SignalP-noTM | UniParc:UPI0004EF0A02 | SEG:seg | : | : | : |
Description
BnaC02g06110D
Coordinates
chrLK031865:-:151552..153312
Molecular Weight (calculated)
27771.6 Da
IEP (calculated)
9.796
GRAVY (calculated)
-0.002
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MACSFAVVIV LLTVVCHLLM STSAATNAEN GWVDAHATFY GGRKGEETMQ GACGYGSLFE QSYGLATTAL STALFNNGTT CGACYEIICV NAPQSCIKGA
101: RPIRVTATNW CPPNYRDGSW CNPPRKHFDL SLPIFLKIAK YKAGIVPVKY RRVMCPKKSG VKFQLAGNPY FLMVTVFNVG RVGVVVEVKV KGSKTGWIKM
201: TRNWAQVWDT NTVLTGQSLS FLVATSDGKR LKFNNIAPSN WQFDQTYNGK SNF
101: RPIRVTATNW CPPNYRDGSW CNPPRKHFDL SLPIFLKIAK YKAGIVPVKY RRVMCPKKSG VKFQLAGNPY FLMVTVFNVG RVGVVVEVKV KGSKTGWIKM
201: TRNWAQVWDT NTVLTGQSLS FLVATSDGKR LKFNNIAPSN WQFDQTYNGK SNF
001: MAAKVITFMA VMVVTAFTAN AKIPGVYTGG PWINAHATFY GEADASGTMG GACGYGNLYS QGYGVNTAAL STALFNNGLS CGSCFELKCI NDPGWCLPGN
101: PSILITATNF CPPNFNQASD NGGWCNPPRE HFDLAMPMFL SIAKYKAGIV PVSYRRIPCR KKGGIRFTIN GFKYFNLVLV TNVAGAGDVI KVSVKGSNTQ
201: WLDLSRNWGQ NWQSNALLVG QSLSFRVKTS DGRSSTSNNI APSNWQFGQT YSGKNFRV
101: PSILITATNF CPPNFNQASD NGGWCNPPRE HFDLAMPMFL SIAKYKAGIV PVSYRRIPCR KKGGIRFTIN GFKYFNLVLV TNVAGAGDVI KVSVKGSNTQ
201: WLDLSRNWGQ NWQSNALLVG QSLSFRVKTS DGRSSTSNNI APSNWQFGQT YSGKNFRV
Arabidopsis Description
EXPA9EXPA9 [Source:UniProtKB/TrEMBL;Acc:A0A178UHJ8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.