Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025397.1-P | Field mustard | extracellular | 99.6 | 99.6 |
| CDX85270 | Canola | extracellular | 96.79 | 96.79 |
| CDY04077 | Canola | extracellular | 81.12 | 82.11 |
| CDY44393 | Canola | extracellular | 80.72 | 81.71 |
| VIT_07s0005g04850.t01 | Wine grape | extracellular | 59.04 | 61.25 |
| KRH44992 | Soybean | extracellular | 62.25 | 59.85 |
| KRH01265 | Soybean | extracellular | 54.62 | 59.65 |
| CDY15952 | Canola | extracellular | 58.63 | 57.25 |
| Solyc03g115310.1.1 | Tomato | extracellular | 59.44 | 57.14 |
| Solyc03g115270.1.1 | Tomato | extracellular | 58.63 | 56.37 |
| Solyc03g115350.1.1 | Tomato | extracellular | 58.23 | 56.2 |
| Solyc03g115320.1.1 | Tomato | extracellular | 57.83 | 55.38 |
| CDX99666 | Canola | extracellular | 59.44 | 55.02 |
| CDX85546 | Canola | extracellular | 55.42 | 54.55 |
| CDX90986 | Canola | extracellular | 55.02 | 54.15 |
| Solyc03g115300.1.1 | Tomato | extracellular | 56.22 | 54.05 |
| Solyc03g115340.1.1 | Tomato | mitochondrion | 37.35 | 52.54 |
| CDY66063 | Canola | cytosol, extracellular, plastid | 34.14 | 51.52 |
| CDX74479 | Canola | extracellular | 55.82 | 51.1 |
| CDY37873 | Canola | extracellular | 55.82 | 51.1 |
| CDY44069 | Canola | extracellular | 31.73 | 50.64 |
| GSMUA_Achr4P27950_001 | Banana | extracellular | 49.4 | 50.0 |
| GSMUA_Achr4P28010_001 | Banana | extracellular | 49.4 | 50.0 |
| TraesCS7B01G218200.1 | Wheat | cytosol, extracellular, plastid | 49.4 | 49.6 |
| GSMUA_Achr4P27910_001 | Banana | extracellular | 49.0 | 49.59 |
| TraesCS7D01G314100.1 | Wheat | extracellular | 50.2 | 48.45 |
| HORVU7Hr1G075680.1 | Barley | extracellular | 50.2 | 48.45 |
| EES14420 | Sorghum | extracellular | 51.0 | 47.74 |
| CDX75827 | Canola | extracellular | 42.17 | 47.3 |
| Zm00001d035083_P001 | Maize | extracellular | 52.21 | 46.93 |
| CDY71742 | Canola | extracellular | 36.14 | 44.78 |
| CDY71009 | Canola | extracellular | 36.14 | 44.78 |
| CDX97663 | Canola | extracellular | 44.98 | 44.62 |
| CDX82436 | Canola | extracellular | 44.98 | 44.62 |
| CDX98555 | Canola | extracellular | 44.58 | 44.22 |
| CDY16014 | Canola | extracellular | 46.18 | 43.73 |
| CDY58613 | Canola | extracellular | 44.98 | 42.59 |
| CDY21056 | Canola | extracellular | 44.98 | 42.59 |
| CDY57071 | Canola | extracellular | 44.18 | 41.83 |
| CDX98053 | Canola | extracellular | 44.18 | 41.83 |
| CDY69805 | Canola | extracellular | 25.7 | 41.56 |
| CDY64890 | Canola | extracellular | 40.96 | 39.69 |
| CDY44426 | Canola | extracellular | 18.07 | 37.19 |
| Os12t0546800-01 | Rice | plasma membrane | 40.56 | 34.83 |
| PGSC0003DMT400063359 | Potato | cytosol, plastid, vacuole | 53.01 | 32.2 |
| PGSC0003DMT400063363 | Potato | extracellular | 57.83 | 29.51 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.1 | GO:A0A078DBC6 | EnsemblPlants:CDX86367 | ProteinID:CDX86367 |
| ProteinID:CDX86367.1 | InterPro:Expan_Lol_pI | InterPro:Expansin | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016043 |
| EnsemblPlantsGene:GSBRNA2T00144493001 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | PFAM:PF01357 |
| PFAM:PF03330 | PRINTS:PR01225 | PRINTS:PR01226 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31867 |
| PANTHER:PTHR31867:SF33 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 |
| SignalP:SignalP-noTM | UniParc:UPI0004EDCCF2 | SEG:seg | : | : | : |
Description
BnaA06g30840D
Coordinates
chrLK031845:-:1233913..1235263
Molecular Weight (calculated)
27372.7 Da
IEP (calculated)
7.679
GRAVY (calculated)
-0.051
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLALAFVVL LAILVSVADA EWDDAHATFY GDINGGETMQ GACGYGDLFQ EGYGLETAAL STALFNNGKT CGACFELVCA NSKWCKPNAG SITVTATNFC
101: PPNYSPPLNT RWCNPPNKHF DLSMKMFVSI AEYSEGIVPV KFRRVKCQKR GGVRFEIKGN PYFIMVLVYN VGGAGDVTSL AIRGNNSPWI PMQRNWGQNW
201: NTGVRLVGQR LSFLVQTSDG MRMTFVDVAS ENWGFGQTFE ASRATLNFH
101: PPNYSPPLNT RWCNPPNKHF DLSMKMFVSI AEYSEGIVPV KFRRVKCQKR GGVRFEIKGN PYFIMVLVYN VGGAGDVTSL AIRGNNSPWI PMQRNWGQNW
201: NTGVRLVGQR LSFLVQTSDG MRMTFVDVAS ENWGFGQTFE ASRATLNFH
001: MKLLEKMIYV EFLMIIMVIW VVPMSYGHGA MIGNAVEAPD VAEAPGINDP SKALDTNWYD ARATFYGDIH GGDTQQGACG YGNLFRQGYG LATAALSTAL
101: FNDGYTCGAC YEIMCTRDPQ WCLPGSVKIT ATNFCPANYS KTTDLWCNPP QKHFDLSLAM FLKIAKYKAG VVPVRYRRIP CSKTGGVKFE TKGNPYFLMV
201: LIYNVGGAGD IKYVQVKGNK TGWITMKKNW GQNWTTITVL TGQGLSFRVT TSDGITKDFW NVMPKNWGFG QTFDGRINF
101: FNDGYTCGAC YEIMCTRDPQ WCLPGSVKIT ATNFCPANYS KTTDLWCNPP QKHFDLSLAM FLKIAKYKAG VVPVRYRRIP CSKTGGVKFE TKGNPYFLMV
201: LIYNVGGAGD IKYVQVKGNK TGWITMKKNW GQNWTTITVL TGQGLSFRVT TSDGITKDFW NVMPKNWGFG QTFDGRINF
Arabidopsis Description
EXPA22Expansin-A22 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL80]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.