CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001593.1-P	Field mustard	extracellular	98.2	86.85
CDX82436	Canola	extracellular	98.2	86.85
CDX97663	Canola	extracellular	95.5	84.46
CDX98555	Canola	extracellular	95.05	84.06
AT3G15370.2	Thale cress	extracellular	88.74	69.86
KRH26080	Soybean	extracellular	68.92	59.77
KRH55327	Soybean	extracellular	68.92	59.53
GSMUA_Achr1P00140_001	Banana	extracellular	64.86	59.26
Solyc07g063210.2.1	Tomato	extracellular	66.22	57.42
VIT_19s0014g02910.t01	Wine grape	extracellular	65.32	56.42
CDY71742	Canola	extracellular	40.09	44.28
CDY71009	Canola	extracellular	40.09	44.28
CDY66063	Canola	cytosol, extracellular, plastid	31.53	42.42
CDY44069	Canola	extracellular	29.73	42.31
CDX86367	Canola	extracellular	47.3	42.17
CDX85270	Canola	extracellular	46.85	41.77
CDY04077	Canola	extracellular	45.5	41.06
CDY44393	Canola	extracellular	45.5	41.06
CDY64890	Canola	extracellular	47.3	40.86
CDX85546	Canola	extracellular	45.05	39.53
CDY58613	Canola	extracellular	45.95	38.78
CDY21056	Canola	extracellular	45.95	38.78
CDY16014	Canola	extracellular	45.95	38.78
CDX98053	Canola	extracellular	45.95	38.78
CDX90986	Canola	extracellular	44.14	38.74
CDY57071	Canola	extracellular	45.5	38.4
CDY69805	Canola	extracellular	26.13	37.66
CDY15952	Canola	extracellular	42.79	37.25
CDX99666	Canola	extracellular	43.69	36.06
CDY37873	Canola	extracellular	44.14	36.03
CDX74479	Canola	extracellular	44.14	36.03
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	67.12	33.48
CDY44426	Canola	extracellular	13.51	24.79

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	GO:A0A078CGB4	EnsemblPlants:CDX75827	ProteinID:CDX75827
ProteinID:CDX75827.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf
GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00123787001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	PFAM:PF01357
PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843	PFscan:PS51257
PANTHER:PTHR31867	PANTHER:PTHR31867:SF24	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0004EEB467	SEG:seg	:	:

Description

BnaC03g39100D

Coordinates

chrLK031805:+:959177..960517

Molecular Weight (calculated)

24709.7 Da

IEP (calculated)

10.961

GRAVY (calculated)

-0.278

Length

222 amino acids

Sequence
(BLAST)

001: MEMKGKYLVT IILLVSGACG YDNPYHAGFG AHTAALSGAL FKSGESCGGC YQVRCDYRAD PKWCLRGAAV TVTATNFCPS NNNGGWCNLP RHHFDMSMPA
101: FFRIARRGNE GIVPVFYRRV GCRRRGGVRF TMRGQGNFNM VILSNVGGSG AVKAVAVRGS RGKTWHQMTR NWGANWQSSG DLRGQRLSFR VTLLDRKTMT
201: FLNVVPSSWW FGQTFSSRDQ FH

Best Arabidopsis Sequence Match ( AT3G15370.1 )
(BLAST)

001: MDMKGTYLVT VILLVSTLSV GMCSNGWIRA HATYYGVNDS PASLGGACGY DNPYHAGFGA HTAALSGELF RSGESCGGCY QVRCDFPADP KWCLRGAAVT
101: VTATNFCPTN NNNGWCNLPR HHFDMSSPAF FRIARRGNEG IVPVFYRRVG CKRRGGVRFT MRGQGNFNMV MISNVGGGGS VRSVAVRGSK GKTWLQMTRN
201: WGANWQSSGD LRGQRLSFKV TLTDSKTQTF LNVVPSSWWF GQTFSSRGRQ FV

Arabidopsis Description

ATEXPA12Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.