Factsheet for GSMUA_Achr1P00140_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	63.37	66.96
KRH55327	Soybean	extracellular	70.37	66.54
KRH26080	Soybean	extracellular	69.96	66.41
VIT_19s0014g02910.t01	Wine grape	extracellular	69.55	65.76
CDX75827	Canola	extracellular	59.26	64.86
Bra001593.1-P	Field mustard	extracellular	65.02	62.95
CDX97663	Canola	extracellular	65.02	62.95
CDX98555	Canola	extracellular	64.61	62.55
CDX82436	Canola	extracellular	64.2	62.15
Solyc07g063210.2.1	Tomato	extracellular	65.43	62.11
AT3G15370.2	Thale cress	extracellular	62.96	54.26
GSMUA_Achr11P...	Banana	extracellular	52.26	50.8
GSMUA_Achr5P20270_001	Banana	extracellular	46.91	43.18
GSMUA_Achr10P...	Banana	extracellular	45.68	42.69
GSMUA_Achr1P15400_001	Banana	extracellular	45.27	41.98
GSMUA_Achr4P27950_001	Banana	extracellular	40.33	39.84
GSMUA_Achr4P28010_001	Banana	extracellular	39.92	39.43
GSMUA_Achr4P27910_001	Banana	extracellular	39.09	38.62
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	65.84	35.96
GSMUA_AchrUn_...	Banana	extracellular	32.1	34.36

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
EnsemblPlantsGene:GSMUA_Achr1G00140_001	EnsemblPlants:GSMUA_Achr1P00140_001	EnsemblPlants:GSMUA_Achr1T00140_001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M0RVS2	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF24	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002957AAA	:

Description

Expansin-A12 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00140_001]

Coordinates

chr1:-:106865..107795

Molecular Weight (calculated)

26049.8 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.083

Length

243 amino acids

Sequence
(BLAST)

001: MVSLIFFAML SLAVAKAQWL PGHATFYGAN QDPTSLGGAC GYDNTIHAGF GINTAALSGA LFRQGEACGA CFEIACDAGA DPQWCLGHAT VTVTATNFCP
101: PNNNGGWCDP PRRHFDMSLP AFSRIARVGS EGIVPVLYRR VACKRSGGVR FTLKGQGNFN LVMFSNVGGS GDVKAAWIRG SRASTWSAMQ RNWGANWQTN
201: ADYRNQRLSF RLALGDGKTL EFSGVVPSSW SPGETFVSQT QFS

Best Arabidopsis Sequence Match ( AT3G15370.1 )
(BLAST)

001: MDMKGTYLVT VILLVSTLSV GMCSNGWIRA HATYYGVNDS PASLGGACGY DNPYHAGFGA HTAALSGELF RSGESCGGCY QVRCDFPADP KWCLRGAAVT
101: VTATNFCPTN NNNGWCNLPR HHFDMSSPAF FRIARRGNEG IVPVFYRRVG CKRRGGVRFT MRGQGNFNMV MISNVGGGGS VRSVAVRGSK GKTWLQMTRN
201: WGANWQSSGD LRGQRLSFKV TLTDSKTQTF LNVVPSSWWF GQTFSSRGRQ FV

Arabidopsis Description

ATEXPA12Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.