Factsheet for Bra027249.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97663	Canola	extracellular	99.57	91.24
CDX98555	Canola	extracellular	98.7	90.44
Bra001593.1-P	Field mustard	extracellular	95.65	87.65
AT3G15370.2	Thale cress	extracellular	90.43	73.76
KRH26080	Soybean	extracellular	71.3	64.06
KRH55327	Soybean	extracellular	70.87	63.42
GSMUA_Achr1P00140_001	Banana	extracellular	66.96	63.37
VIT_19s0014g02910.t01	Wine grape	extracellular	69.13	61.87
Solyc07g063210.2.1	Tomato	extracellular	66.52	59.77
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	13.48	49.21
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	48.26	46.25
Bra023523.1-P	Field mustard	cytosol	46.52	45.73
Bra025397.1-P	Field mustard	extracellular	47.39	43.78
Bra033068.1-P	Field mustard	cytosol	17.83	43.16
Bra033099.1-P	Field mustard	extracellular	46.09	43.09
Bra000142.1-P	Field mustard	extracellular	29.57	41.21
Bra016473.1-P	Field mustard	extracellular	30.43	41.18
Bra026965.1-P	Field mustard	extracellular	46.96	41.06
Bra016767.1-P	Field mustard	extracellular	46.96	41.06
Bra030353.1-P	Field mustard	extracellular	45.22	40.78
Bra019775.1-P	Field mustard	extracellular	46.52	40.68
Bra028232.1-P	Field mustard	extracellular	44.78	37.87
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	68.26	35.28

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra027249	EnsemblPlants:Bra027249.1	EnsemblPlants:Bra027249.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4EEN7	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF24	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002547A2C	SEG:seg	:

Description

AT3G15370 (E=3e-111) ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1.24 | ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)

Coordinates

chrA05:-:19941493..19942502

Molecular Weight (calculated)

25364.2 Da

IEP (calculated)

10.843

GRAVY (calculated)

-0.346

Length

230 amino acids

Sequence
(BLAST)

001: MCSNGWIRAH ATYYGVNDSP ASLGGACGYD NPYHAGFGAH TAALSGALFR NGESCGGCYQ VRCDYWADPK WCLRGAAVTV TATNFCPSNN NGGWCNLPRH
101: HFDMSMPAFF RIARRGNEGI VPVFYRRVGC KRRGGVRFTM RGQGNFNMVI LSNVGGSGAV KAGAVRGSRG KTWRQMTRNW GANWQSSGDL RGQRLSFRVT
201: LLDRKTMTFL NVVPSSWWFG QTFSGRGQFL

Best Arabidopsis Sequence Match ( AT3G15370.1 )
(BLAST)

001: MDMKGTYLVT VILLVSTLSV GMCSNGWIRA HATYYGVNDS PASLGGACGY DNPYHAGFGA HTAALSGELF RSGESCGGCY QVRCDFPADP KWCLRGAAVT
101: VTATNFCPTN NNNGWCNLPR HHFDMSSPAF FRIARRGNEG IVPVFYRRVG CKRRGGVRFT MRGQGNFNMV MISNVGGGGS VRSVAVRGSK GKTWLQMTRN
201: WGANWQSSGD LRGQRLSFKV TLTDSKTQTF LNVVPSSWWF GQTFSSRGRQ FV

Arabidopsis Description

ATEXPA12Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.