Factsheet for Bra001593.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82436	Canola	extracellular	98.41	98.41
CDX75827	Canola	extracellular	86.85	98.2
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	87.65	95.65
AT3G15370.2	Thale cress	extracellular	89.24	79.43
KRH26080	Soybean	extracellular	66.93	65.62
GSMUA_Achr1P00140_001	Banana	extracellular	62.95	65.02
KRH55327	Soybean	extracellular	66.53	64.98
VIT_19s0014g02910.t01	Wine grape	extracellular	62.95	61.48
Solyc07g063210.2.1	Tomato	extracellular	61.75	60.55
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	12.35	49.21
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	44.22	46.25
Bra023523.1-P	Field mustard	cytosol	42.63	45.73
Bra025397.1-P	Field mustard	extracellular	44.62	44.98
Bra033099.1-P	Field mustard	extracellular	43.43	44.31
Bra000142.1-P	Field mustard	extracellular	28.69	43.64
Bra033068.1-P	Field mustard	cytosol	16.33	43.16
Bra016473.1-P	Field mustard	extracellular	28.69	42.35
Bra026965.1-P	Field mustard	extracellular	44.22	42.21
Bra019775.1-P	Field mustard	extracellular	44.22	42.21
Bra016767.1-P	Field mustard	extracellular	44.22	42.21
Bra030353.1-P	Field mustard	extracellular	40.24	39.61
Bra028232.1-P	Field mustard	extracellular	41.83	38.6
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	62.95	35.51

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra001593	EnsemblPlants:Bra001593.1	EnsemblPlants:Bra001593.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4CBL3	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF24	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002540A3F
SEG:seg	:	:	:	:	:

Description

AT3G15370 (E=9e-120) ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1.24 | ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)

Coordinates

chrA03:+:17249470..17250586

Molecular Weight (calculated)

27705.3 Da

IEP (calculated)

11.248

GRAVY (calculated)

-0.234

Length

251 amino acids

Sequence
(BLAST)

001: MGMKGKYLVT IILLVSTLSV GMCSNRWIRA HATFYGVNDS PASLGGACGY DNPYHAGFGA HTAALSGALF KSGESCGGCY QVRCDYRADP KWCLRGAAVT
101: VTATNFCPSN NNGGWCNLPR HHFDMSMPAF FRIARRGNEG IVPVFYRRVG CRRRGGVRFT MRGQGNFNMV ILSNVGGSGA VKAVAVRGSR GKTWRQMTRN
201: WGANWQSSGD LRGQRLSFRV NLLDRKTMTF LNVVPSSWWF GQTFSSRGQF H

Best Arabidopsis Sequence Match ( AT3G15370.1 )
(BLAST)

001: MDMKGTYLVT VILLVSTLSV GMCSNGWIRA HATYYGVNDS PASLGGACGY DNPYHAGFGA HTAALSGELF RSGESCGGCY QVRCDFPADP KWCLRGAAVT
101: VTATNFCPTN NNNGWCNLPR HHFDMSSPAF FRIARRGNEG IVPVFYRRVG CKRRGGVRFT MRGQGNFNMV MISNVGGGGS VRSVAVRGSK GKTWLQMTRN
201: WGANWQSSGD LRGQRLSFKV TLTDSKTQTF LNVVPSSWWF GQTFSSRGRQ FV

Arabidopsis Description

ATEXPA12Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.