Factsheet for Bra025397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86367	Canola	extracellular	99.6	99.6
Bra033099.1-P	Field mustard	extracellular	80.72	81.71
VIT_07s0005g04850.t01	Wine grape	extracellular	59.44	61.67
KRH44992	Soybean	extracellular	62.25	59.85
KRH01265	Soybean	extracellular	54.62	59.65
Bra023523.1-P	Field mustard	cytosol	53.82	57.27
Bra030353.1-P	Field mustard	extracellular	58.63	57.25
Solyc03g115310.1.1	Tomato	extracellular	59.44	57.14
Solyc03g115270.1.1	Tomato	extracellular	58.63	56.37
Solyc03g115350.1.1	Tomato	extracellular	58.23	56.2
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	14.06	55.56
Solyc03g115320.1.1	Tomato	extracellular	57.83	55.38
Solyc03g115300.1.1	Tomato	extracellular	56.22	54.05
Solyc03g115340.1.1	Tomato	mitochondrion	37.35	52.54
Bra028232.1-P	Field mustard	extracellular	55.42	50.74
GSMUA_Achr4P27950_001	Banana	extracellular	49.4	50.0
GSMUA_Achr4P28010_001	Banana	extracellular	49.4	50.0
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	49.4	49.6
GSMUA_Achr4P27910_001	Banana	extracellular	49.0	49.59
TraesCS7D01G314100.1	Wheat	extracellular	50.2	48.45
HORVU7Hr1G075680.1	Barley	extracellular	50.2	48.45
Bra033068.1-P	Field mustard	cytosol	18.47	48.42
EES14420	Sorghum	extracellular	51.0	47.74
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	43.78	47.39
Zm00001d035083_P001	Maize	extracellular	52.21	46.93
Bra000142.1-P	Field mustard	extracellular	30.92	46.67
Bra016473.1-P	Field mustard	extracellular	30.92	45.29
Bra001593.1-P	Field mustard	extracellular	44.98	44.62
Bra026965.1-P	Field mustard	extracellular	46.18	43.73
Bra016767.1-P	Field mustard	extracellular	44.98	42.59
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	40.96	42.5
Bra019775.1-P	Field mustard	extracellular	44.18	41.83
Os12t0546800-01	Rice	plasma membrane	40.56	34.83
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	53.01	32.2
PGSC0003DMT400063363	Potato	extracellular	57.83	29.51

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra025397	EnsemblPlants:Bra025397.1	EnsemblPlants:Bra025397.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4E9E1	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF33	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI000253FA78	SEG:seg

Description

AT5G39280 (E=2e-087) ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17 | ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)

Coordinates

chrA06:-:21819505..21820816

Molecular Weight (calculated)

27300.6 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.039

Length

249 amino acids

Sequence
(BLAST)

001: MNLALAFVVL LAILVSVADA EWDDAHATFY GDINGGETMQ GACGYGDLFQ EGYGLETAAL STALFNNGKT CGACFELVCA NSKWCKPNAG SITVTATNFC
101: PPNYSPPLNT RWCNPPNKHF DLSMKMFVSI AEYSGGIVPV KFRRVKCQKR GGVRFEIKGN PYFIMVLVYN VGGAGDVTSL AIRGNNSPWI PMQRNWGQNW
201: NTGVRLVGQR LSFLVQTSDG MRMTFVDVAS ENWGFGQTFE ASRATLNFH

Best Arabidopsis Sequence Match ( AT5G39280.1 )
(BLAST)

001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF

Arabidopsis Description

EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.