Factsheet for GSMUA_Achr4P28010_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27950_001	Banana	extracellular	96.34	96.34
GSMUA_Achr4P27910_001	Banana	extracellular	94.31	94.31
VIT_07s0005g04850.t01	Wine grape	extracellular	49.19	50.42
VIT_14s0068g00600.t01	Wine grape	extracellular	50.41	49.4
CDX86367	Canola	extracellular	50.0	49.4
Bra025397.1-P	Field mustard	extracellular	50.0	49.4
CDX85270	Canola	extracellular	49.59	49.0
KRH44992	Soybean	extracellular	50.81	48.26
KRH01265	Soybean	extracellular	44.72	48.25
Bra033099.1-P	Field mustard	extracellular	47.15	47.15
CDY44393	Canola	extracellular	47.15	47.15
CDY04077	Canola	extracellular	47.15	47.15
Solyc03g115270.1.1	Tomato	extracellular	49.19	46.72
Solyc03g115310.1.1	Tomato	extracellular	49.19	46.72
Bra023523.1-P	Field mustard	cytosol	44.31	46.58
Solyc03g115320.1.1	Tomato	extracellular	49.19	46.54
Solyc03g115350.1.1	Tomato	extracellular	48.78	46.51
Solyc03g115300.1.1	Tomato	extracellular	48.78	46.33
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	45.53	45.16
HORVU7Hr1G075680.1	Barley	extracellular	47.15	44.96
CDY15952	Canola	extracellular	45.94	44.31
Bra030353.1-P	Field mustard	extracellular	45.94	44.31
CDX85546	Canola	extracellular	45.53	44.27
CDX90986	Canola	extracellular	45.53	44.27
TraesCS7D01G314100.1	Wheat	extracellular	45.94	43.8
Solyc03g115340.1.1	Tomato	mitochondrion	31.3	43.5
GSMUA_Achr11P...	Banana	extracellular	43.5	42.8
CDX99666	Canola	extracellular	46.75	42.75
GSMUA_Achr10P...	Banana	extracellular	45.12	42.69
GSMUA_Achr5P20270_001	Banana	extracellular	45.12	42.05
EES14420	Sorghum	extracellular	44.31	40.98
AT5G39270.1	Thale cress	extracellular	46.34	40.86
AT5G39290.1	Thale cress	extracellular	46.34	40.86
AT5G39260.1	Thale cress	extracellular	43.5	40.84
GSMUA_Achr1P00140_001	Banana	extracellular	39.43	39.92
CDY37873	Canola	extracellular	43.9	39.71
CDX74479	Canola	extracellular	43.9	39.71
Zm00001d035083_P001	Maize	extracellular	44.31	39.35
Bra028232.1-P	Field mustard	extracellular	43.5	39.34
AT5G39280.1	Thale cress	extracellular	43.9	39.27
AT5G39300.1	Thale cress	extracellular	43.9	39.13
GSMUA_Achr1P15400_001	Banana	extracellular	39.43	37.02
AT5G39310.1	Thale cress	extracellular	43.09	33.97
Os12t0546800-01	Rice	plasma membrane	38.21	32.41
GSMUA_AchrUn_...	Banana	extracellular	26.42	28.63
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	43.5	26.1
PGSC0003DMT400063363	Potato	extracellular	48.78	24.59

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
EnsemblPlantsGene:GSMUA_Achr4G28010_001	EnsemblPlants:GSMUA_Achr4P28010_001	EnsemblPlants:GSMUA_Achr4T28010_001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M0SSR3	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF33	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294CFDB

Description

Putative Expansin-A9 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28010_001]

Coordinates

chr4:+:26594952..26596022

Molecular Weight (calculated)

26674.0 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.000

Length

246 amino acids

Sequence
(BLAST)

001: MAMTVISVVV VMSFALMAMA VMAQGPWDTA DATFYGDMSG KATMGGTCGY DNLFEHGYGL SNTALSTVLF NDGEKCGACF ELKCAAGPDR CKEGSTIVTA
101: TSFCPPAPVS LCNPPQKHFD LSMAMYMKIA KTAYSGSIPV QFRRVPCVRE GDIGFEFRGN PFWISVLVYN VAGSGDVAKL SVRGSNTTWV PMTRSWGQRW
201: QLSFRPEMVG QSLSFKVTTG DNKTVESVDV APANWQFGQR YTGGQF

Best Arabidopsis Sequence Match ( AT2G39700.1 )
(BLAST)

001: MAIKLAILFT TFVLFSLADA RIPGIYSGGA WQNAHATFYG GSDASGTMGG ACGYGNLYSQ GYGTNTAALS TALFNNGMSC GACFELKCAN DPQWCHSGSP
101: SILITATNFC PPNLAQPSDN GGWCNPPREH FDLAMPVFLK IAQYRAGIVP VSYRRVPCRK RGGIRFTING HRYFNLVLIT NVAGAGDIVR ASVKGSRTGW
201: MSLSRNWGQN WQSNAVLVGQ ALSFRVTGSD RRTSTSWNMV PSNWQFGQTF VGKNFRV

Arabidopsis Description

EXPA4Expansin-A4 [Source:UniProtKB/Swiss-Prot;Acc:O48818]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.