Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G39280.1 | Thale cress | extracellular | 95.29 | 95.64 |
| AT5G39270.1 | Thale cress | extracellular | 79.35 | 78.49 |
| AT5G39290.1 | Thale cress | extracellular | 79.35 | 78.49 |
| Bra028232.1-P | Field mustard | extracellular | 71.74 | 72.79 |
| CDY37873 | Canola | extracellular | 71.38 | 72.43 |
| CDX74479 | Canola | extracellular | 71.38 | 72.43 |
| AT5G39260.1 | Thale cress | extracellular | 66.67 | 70.23 |
| VIT_07s0005g04850.t01 | Wine grape | extracellular | 51.81 | 59.58 |
| Solyc03g115310.1.1 | Tomato | extracellular | 54.71 | 58.3 |
| Solyc03g115270.1.1 | Tomato | extracellular | 54.35 | 57.92 |
| Solyc03g115350.1.1 | Tomato | extracellular | 53.62 | 57.36 |
| Solyc03g115320.1.1 | Tomato | extracellular | 52.9 | 56.15 |
| KRH01265 | Soybean | extracellular | 46.38 | 56.14 |
| AT5G39310.1 | Thale cress | extracellular | 63.04 | 55.77 |
| KRH44992 | Soybean | extracellular | 52.17 | 55.6 |
| Solyc03g115300.1.1 | Tomato | extracellular | 50.72 | 54.05 |
| Solyc03g115340.1.1 | Tomato | mitochondrion | 33.33 | 51.98 |
| TraesCS7B01G218200.1 | Wheat | cytosol, extracellular, plastid | 44.57 | 49.6 |
| TraesCS7D01G314100.1 | Wheat | extracellular | 45.29 | 48.45 |
| HORVU7Hr1G075680.1 | Barley | extracellular | 45.29 | 48.45 |
| AT1G12560.1 | Thale cress | extracellular | 44.2 | 46.56 |
| AT1G62980.1 | Thale cress | extracellular | 42.39 | 45.53 |
| GSMUA_Achr4P27950_001 | Banana | extracellular | 39.86 | 44.72 |
| Zm00001d035083_P001 | Maize | extracellular | 44.57 | 44.4 |
| EES14420 | Sorghum | extracellular | 42.75 | 44.36 |
| GSMUA_Achr4P28010_001 | Banana | extracellular | 39.13 | 43.9 |
| GSMUA_Achr4P27910_001 | Banana | extracellular | 39.13 | 43.9 |
| AT3G15370.2 | Thale cress | extracellular | 38.41 | 37.59 |
| Os12t0546800-01 | Rice | plasma membrane | 36.96 | 35.17 |
| PGSC0003DMT400063359 | Potato | cytosol, plastid, vacuole | 49.28 | 33.17 |
| PGSC0003DMT400063363 | Potato | extracellular | 53.99 | 30.53 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.1 | EntrezGene:833926 | UniProt:A0A178UJY9 | ProteinID:AED94417.2 |
| ArrayExpress:AT5G39300 | EnsemblPlantsGene:AT5G39300 | RefSeq:AT5G39300 | TAIR:AT5G39300 | RefSeq:AT5G39300-TAIR-G | EnsemblPlants:AT5G39300.1 |
| TAIR:AT5G39300.1 | Symbol:ATEXPA25 | ProteinID:BAB09385.1 | EMBL:BX832887 | InterPro:Expan_Lol_pI | InterPro:Expansin |
| InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0030312 | GO:GO:0071555 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 |
| InterPro:IPR036908 | RefSeq:NP_198746.2 | ProteinID:OAO94138.1 | PFAM:PF01357 | PFAM:PF03330 | PRINTS:PR01225 |
| PRINTS:PR01226 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31867 | PANTHER:PTHR31867:SF70 | UniProt:Q9FL77 |
| InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 | TMHMM:TMhelix |
| UniParc:UPI000012A2C0 | : | : | : | : | : |
Description
EXPA25Expansin-A25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL77]
Coordinates
chr5:-:15737366..15738479
Molecular Weight (calculated)
30492.6 Da
IEP (calculated)
7.280
GRAVY (calculated)
-0.147
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLEQMVYV ECFMIIMATL LVSMSYGHRA MINDVAEAPV IDNVGSPTNG LDSSWYDARA TFYGDIHGGE TQQGACGYGD LFKQGYGLET AALSTALFNE
101: GYTCGACYQI MCVHDPQWCL PGTIKITATN FCPPDYSKTE GVWCNPPQKH FDLSLPMFLK IAQYKAGVVP VKYRRISCAR TGGVKFETKG NPYFLMILPY
201: NVGGAGDIKL MQVKGDKTGW ITMQKNWGQN WTTGVNLTGQ GISFRVTTSD GVTKDFNNVM PNNWGFGQTF DGKINF
101: GYTCGACYQI MCVHDPQWCL PGTIKITATN FCPPDYSKTE GVWCNPPQKH FDLSLPMFLK IAQYKAGVVP VKYRRISCAR TGGVKFETKG NPYFLMILPY
201: NVGGAGDIKL MQVKGDKTGW ITMQKNWGQN WTTGVNLTGQ GISFRVTTSD GVTKDFNNVM PNNWGFGQTF DGKINF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.