Factsheet for AT5G39280.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G39300.1	Thale cress	extracellular	95.64	95.29
AT5G39270.1	Thale cress	extracellular	80.0	78.85
AT5G39290.1	Thale cress	extracellular	80.0	78.85
Bra028232.1-P	Field mustard	extracellular	72.0	72.79
CDY37873	Canola	extracellular	71.64	72.43
CDX74479	Canola	extracellular	71.64	72.43
AT5G39260.1	Thale cress	extracellular	65.82	69.08
VIT_07s0005g04850.t01	Wine grape	extracellular	51.27	58.75
Solyc03g115310.1.1	Tomato	extracellular	54.91	58.3
Solyc03g115270.1.1	Tomato	extracellular	54.55	57.92
Solyc03g115350.1.1	Tomato	extracellular	53.82	57.36
Solyc03g115320.1.1	Tomato	extracellular	53.09	56.15
KRH01265	Soybean	extracellular	46.55	56.14
KRH44992	Soybean	extracellular	52.36	55.6
AT5G39310.1	Thale cress	extracellular	62.91	55.45
Solyc03g115300.1.1	Tomato	extracellular	51.27	54.44
Solyc03g115340.1.1	Tomato	mitochondrion	33.82	52.54
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	44.73	49.6
TraesCS7D01G314100.1	Wheat	extracellular	45.09	48.06
HORVU7Hr1G075680.1	Barley	extracellular	45.09	48.06
AT1G12560.1	Thale cress	extracellular	44.36	46.56
Zm00001d035083_P001	Maize	extracellular	45.09	44.77
AT1G62980.1	Thale cress	extracellular	41.82	44.75
GSMUA_Achr4P27950_001	Banana	extracellular	40.0	44.72
EES14420	Sorghum	extracellular	42.91	44.36
GSMUA_Achr4P28010_001	Banana	extracellular	39.27	43.9
GSMUA_Achr4P27910_001	Banana	extracellular	39.27	43.9
AT3G15370.2	Thale cress	extracellular	38.55	37.59
Os12t0546800-01	Rice	plasma membrane	37.09	35.17
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	49.45	33.17
PGSC0003DMT400063363	Potato	extracellular	54.18	30.53

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EntrezGene:833924	ProteinID:AED94415.2	ArrayExpress:AT5G39280
EnsemblPlantsGene:AT5G39280	RefSeq:AT5G39280	TAIR:AT5G39280	RefSeq:AT5G39280-TAIR-G	EnsemblPlants:AT5G39280.1	TAIR:AT5G39280.1
Symbol:ATEXPA23	ProteinID:BAB09383.1	EMBL:DQ056699	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	RefSeq:NP_198744.2
PFAM:PF01357	PFAM:PF03330	PO:PO:0009010	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842
PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF70	UniProt:Q9FL79	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	TMHMM:TMhelix	UniParc:UPI00020B9E57	:

Description

EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]

Coordinates

chr5:-:15730653..15731790

Molecular Weight (calculated)

30317.4 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.145

Length

275 amino acids

Sequence
(BLAST)

001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.